Table 3   Putative transport proteins identified in Ralstonia metallidurans   Nearest Homolog in TCDB   
Family    Family                                                                                                                    Abbreviation    NCBI COGs (<<NCBI proteins) Typical Substrates                                                          Organism    Total Number    subfamily substrate (see table) Rme2000old Gene                        04dec00b Gene                        2-Jul-03 unsere Bezeichnung' RmeNov2003 RmeDec04 see gene region DOE see DOE annotation see DOE blastn results >> tblastn Rme2003MRNA vs RmeNCBIProtein(new)  Cluster / Fragment Comp- onent    Identity Length   (#aa)     TMSs   (#)    Nearest Homolog in TCDB    Score     E-Value       evi- dence location TCDB subfamily sequence NCBI sequence
(1) (2) (3) (4) (5) (6) (7) (4) (7) ( . - modified sequence) >> blastp Rme2003protein/Rme2000 vs RmeNCBIProtein(new) (8) (9) (10) (11) (12) (13) (14) (15)
1.A. Alpha -Type Channel-forming Proteins and Peptides  1.A.1.2.3
1.A.1 Docu Voltage-gated Ion Channel VIC Na+; K+; Ca2+; multiple cations  E, A, B  Voltage-sensitive K+ channel 1 Contig639gene4314 Contig372gene5732 307 5 1.A.1.2.3(1) 68 8E-13 3 chromosome Seq etc 1.A.1.13.1 protein seq 48769979
COG1226: Kef-type K+ transport systems, predicted NAD-binding component 2 6TMS K+ channel (Kuo et al., 2003) 1 Contig702gene58 Contig702gene7829 Contig373gene6187 Rme_3393 Contig70gene3394 Contig203gene2471 DOE annotation DOE blast gi|48769979|ref|ZP_00274323.1| 229 7 1.A.1.13.1(1) 44 0,00001 3 … Seq etc 1.A.8.13.1 protein seq 203 2471
1.A.8 Docu  Major Intrinsic Protein  MIP H2O; glycerol, urea, polyols, NH3, CO2  B, A, E  MIP family homologue 1 Contig710gene8930 Contig375gene7720 250 6 1.A.8.13.1(1) 46 0,000002 3 … Seq etc 1.A.8.3.1 protein seq 48770597
COG0580: Glycerol uptake facilitator and related permeases (Major Intrinsic 2 Aquaporin Z 3 Contig711gene9157 Contig375gene8643 gi|48770597|ref|ZP_00274940.1| 234 6 1.A.8.3.1(1) 228 3E-61 2 … Seq etc 1.A.11.6.1 protein seq 48771215
1.A.11 Docu  Chloride Channel  ClC COG3448: CBS-domain-containing membrane protein [Ralstonia metallidurans CH34] Cl-, anions  B, A, E  Putative Cl- channel 2 Contig598gene7 Contig598gene3160 Contig365gene3384 Rme_4296 Contig71gene4297 Contig205gene3299 DOE annotation DOE blast gi|48771215|ref|ZP_00275558.1| 376 4 1.A.11.6.1(1) 60 2E-10 3 … Seq etc 1.A.11.6.1 protein seq 205 3299
2 Contig598gene3167 Contig365gene3245 657 12 1.A.11.6.1(1) 56 6E-09 3 … Seq etc 1.A.11.6.1 protein seq 48767917
COG0038: Chloride channel protein EriC [Ralstonia metallidurans CH34] 2 Contig677gene53 Contig677gene5910 Contig352gene1115 Rme_1143 Contig62gene1144 Contig222gene5714 DOE annotation DOE blast gi|48767917|ref|ZP_00272269.1| 560 8 1.A.11.6.1(1) 47 0,000002 3 … Seq etc 1.A.11.6.1 protein seq 48767745 222 5714
COG0038: Chloride channel protein EriC [Ralstonia metallidurans CH34] 4 2 Contig693gene68 Contig693gene7009 Contig367gene3837 Rme_1473 Contig63gene1474 Contig195gene785 DOE annotation DOE blast gi|48767745|ref|ZP_00272098.1| 522 10 1.A.11.6.1(1) 85 9E-18 3 … Seq etc 1.A.20.6.1 protein seq 48767686 195 785
1.A.20 Docu  gp91phox Phagocyte NADPH Oxidase-associated Cytochrome b558  CytB COG4097: Predicted ferric reductase [Ralstonia metallidurans CH34] H+   E (Pl, An)  1 Putative oxido-reductase 1 Contig696gene44 Contig696gene7256 Contig363gene2857 Rme_0854 Contig60gene855 Contig192gene557 DOE annotation DOE blast gi|48767686|ref|ZP_00272040.1| 447 6 1.A.20.6.1(1) 261 4E-71 2 … Seq etc 1.A.22.1.3 protein seq 48767763 192 557
1.A.22 Docu  Large Conductance Mechanosensitive Ion Channel  MscL COG1970: Large-conductance mechanosensitive channel [Ralstonia metallidurans Proteins, ions (slightly cation selective)  B  1 MscL; catalyzes ion and osmolyte release following osmmotic downshift 1 Contig693gene27 Contig693gene6968 Contig367gene3927 Rme_1346 Contig63gene1347 Contig195gene802 DOE annotation DOE blast gi|48767763|ref|ZP_00272116.1| 144 2 1.A.22.1.3(1) 111 2E-26 2 … Seq etc 1.A.23.1.1 protein seq 48768578 195 802
1.A.23 Docu  Small Conductance Mechanosensitive Ion Channel  MscS COG3264: Small-conductance mechanosensitive channel [Ralstonia metallidurans Ions (slight anion selectivity)   B, A  Minor MscS channel protein, KefA 2 Contig545gene10 Contig545gene2048 Contig350gene938 Rme_2885 Contig68gene2886 Contig194gene687 DOE annotation DOE blast gi|48768578|ref|ZP_00272927.1| 456 6 1.A.23.1.1(1) 92 5E-20 2 … Seq etc 1.A.23.1.1 protein seq 48769858 194 687
COG0668: Small-conductance mechanosensitive channel [Ralstonia metallidurans 2 Contig619gene6 Contig619gene3634 Contig373gene6759 Rme_3845 Contig70gene3846 Contig203gene2344 DOE annotation DOE blast gi|48769858|ref|ZP_00274202.1| 357 4 1.A.23.1.1(1) 49 1E-07 3 … Seq etc 1.A.23.1.1 protein seq 48772089 203 2344
COG0668: Small-conductance mechanosensitive channel [Ralstonia metallidurans 2 Contig670gene5 Contig670gene5522 Contig375gene8191 Rme_6162 Contig72gene6163 Contig204gene3121 DOE annotation DOE blast gi|48772089|ref|ZP_00276431.1| 277 3 1.A.23.1.1(1) 50 2E-07 3 … Seq etc 1.A.23.1.1 protein seq 48771898 204 3121
COG3264: Small-conductance mechanosensitive channel [Ralstonia metallidurans 2 Contig697gene68 Contig697gene7356 Contig375gene8051 Rme_5244 Contig72gene5245 Contig222gene4921 DOE annotation DOE blast gi|48771898|ref|ZP_00276240.1| 832 9 1.A.23.1.1(1) 127 2E-30 2 … 222 4921
Seq etc 1.A.23.2.1 protein seq 48771668
COG0668: Small-conductance mechanosensitive channel [Ralstonia metallidurans Major MscS channel protein, YggB 2 Contig634gene27 Contig634gene4160 Contig375gene7869 Rme_5115 Contig72gene5116 Contig202gene2002 DOE annotation DOE blast gi|48771668|ref|ZP_00276010.1| 288 4 1.A.23.2.1(1) 114 6E-27 2 chromosome Seq etc 1.A.23.2.1 protein seq 48768379 202 2002
COG0668: Small-conductance mechanosensitive channel [Ralstonia metallidurans 2 Contig707gene27 Contig707gene8357 Contig372gene5633 Rme_2209 Contig66gene2210 Contig204gene2926 DOE annotation DOE blast gi|48768379|ref|ZP_00272729.1| 284 4 1.A.23.2.1(1) 152 2E-38 2 … 204 2926
Seq etc 1.A.23.3.1 protein seq 48769475
COG0668: Small-conductance mechanosensitive channel [Ralstonia metallidurans The YkuT osmolyte efflux channel 2 Contig640gene3 Contig640gene4349 Contig371gene5100 Rme_3164 Contig69gene3165 Contig201gene1752 DOE annotation DOE blast gi|48769475|ref|ZP_00273821.1| 771 13 1.A.23.3.1(1) 84 3E-17 3 chromosome 201 1752
Seq etc 1.A.23.4.1 protein seq 48772457
COG0668: Small-conductance mechanosensitive channel [Ralstonia metallidurans The MscMJ mechanosensitive channel 2 Contig588gene4 Contig588gene2895 Contig358gene1757 Rme_5568 Contig72gene5569 Contig219gene4154 DOE annotation DOE blast gi|48772457|ref|ZP_00276799.1| 452 6 1.A.23.4.1 66 4E-12 3 chromosome Seq etc 1.A.23.4.1 protein seq 219 4154
9 2 Contig582gene2756 Contig361gene2514 447 5 1.A.23.4.1(1) 52 7E-08 3 … Seq etc 1.A.30.1.1 protein seq 48769266
1.A.30 Docu  H+- or Na+-translocating Bacterial Flagellar Motor 1ExbBD Outer Membrane Transport Energizer  Mot/Exb - Mot COG1291: Flagellar motor component [Ralstonia metallidurans CH34] H+; Na+  B The flagellar motor (pmf-dependent) (MotA-MotB) 1 Contig505gene5 Contig505gene1379 Contig371gene5340 Rme_3016 Contig69gene3017 Contig201gene1554 DOE annotation DOE blast gi|48769266|ref|ZP_00273612.1| component 1 311 4 1.A.30.1.1(2) 333 1E-92 2 … Seq etc 1.A.30.1.1 protein seq 48769267 201 1554
COG1360: Flagellar motor protein [Ralstonia metallidurans CH34] 2 1 Contig505gene6 Contig505gene1380 Contig371gene5341 Rme_3017 Contig69gene3018 Contig201gene1555 DOE annotation DOE blast gi|48769267|ref|ZP_00273613.1| component 2 325 1 1.A.30.1.1(2) 288 2E-79 2 … Seq etc 1.A.33.1.2 protein seq 201 1555
1.A.33 Docu  Cation Channel-forming Heat Shock Protein-70  Hsp70 Ions, polypeptides E, B, A Heat shock protein-70 homologue, DnaK 1 Contig499gene1282 .Contig370gene5054 N-term.fragm. 352 0 1.A.33.1.2(1) 244 4E-66 2 … Seq etc 1.A.33.1.2 protein seq 48770776
COG0443: Molecular chaperone [Ralstonia metallidurans CH34] 1 Contig499gene6 Contig499gene1283 .Contig370gene5054 Rme_4596 Contig71gene4597 Contig205gene3723 DOE annotation DOE blast gi|48770776|ref|ZP_00275119.1| C-term.fragm 271 0 1.A.33.1.2(1) 192 1E-50 2 … Seq etc 1.A.33.1.2 protein seq 205 3723
3 1 Contig639gene4346 Contig372gene5852 643 0 1.A.33.1.2(1) 872 0 2 … Seq etc 1.A.35.1.2 protein seq 48767654
1.A.35 Docu  CorA Metal Ion Transporter  MIT COG0598: Mg2+ and Co2+ transporters [Ralstonia metallidurans CH34] Heavy-metal ions, Mg2+, Mn2+, Co2+, Ni2+, Fe2+; Al3+; Mn2+  B, A, E  Divalent cation (Mg2+, Co2+ and Ni2+) transport system, CorA 1 Contig696gene74 Contig696gene7286 Contig363gene2888 Rme_0875 Contig60gene876 Contig192gene525 DOE annotation DOE blast gi|48767654|ref|ZP_00272008.1| 320 2 1.A.35.1.2(1) 269 1E-73 2 … 192 525
Seq etc 1.A.35.3.1 protein seq 48770568
COG0598: Mg2+ and Co2+ transporters [Ralstonia metallidurans CH34] Divalent metal ion (Mg2+, Ca2+, Ni2+, etc.) transporter 1 Contig572gene15 Contig572gene2547 Contig374gene7317 Rme_4724 Contig71gene4725 Contig222gene5318 DOE annotation DOE blast gi|48770568|ref|ZP_00274911.1| 383 3 1.A.35.3.1(1) 93 2E-20 3 chromosome Seq etc 1.A.35.3.1 protein seq 222 5318
1 Contig645gene4531 Contig365gene3224 362 3 1.A.35.3.1(1) 55 8E-09 3 … Seq etc 1.A.35.3.1 protein seq 48767819
COG0598: Mg2+ and Co2+ transporters [Ralstonia metallidurans CH34] 4 1 Contig679gene53 Contig679gene6008 Contig367gene3951 Rme_1353 Contig63gene1354 Contig195gene855 DOE annotation DOE blast gi|48767819|ref|ZP_00272172.1| 393 2 1.A.35.3.1(1) 54 2E-08 3 … 195 855
 1.B Outer Membrane Porins (ί - structure)  … Seq etc 1.B.1.4.1 protein seq 48772451
1.B.1 Docu  General Bacterial Porin  GBP COG3203: Outer membrane protein (porin) [Ralstonia metallidurans CH34] ions, small (Mr of <1000 Da) molecules B, A, plastids Omp porin 1 Contig420gene6 Contig420gene434 Contig358gene1907 Rme_5960 Contig72gene5961 Contig219gene4148 DOE annotation DOE blast gi|48772451|ref|ZP_00276793.1| 367 1 1.B.1.4.1(1) 120 1E-28 2 chromosome Seq etc 1.B.1.4.1 protein seq 219 4148
1 Contig453gene712 Contig340gene366 470 4 1.B.1.4.1(1) 94 2E-20 3 … Seq etc 1.B.1.4.1 protein seq
1 Contig485gene1110 .00Dec2000-Contig485gene1110 231 3 1.B.1.4.1(1) 75 2E-15 3 … Seq etc 1.B.1.4.1 protein seq 48769813
COG3203: Outer membrane protein (porin) [Ralstonia metallidurans CH34] 1 Contig508gene4 Contig508gene1425 Contig373gene6049 Rme_3290 Contig70gene3291 Contig203gene2299 DOE annotation DOE blast gi|48769813|ref|ZP_00274157.1| 381 1 1.B.1.4.1(1) 90 2E-19 3 … Seq etc 1.B.1.4.1 protein seq 48769810 203 2299
COG3203: Outer membrane protein (porin) [Ralstonia metallidurans CH34] 1 Contig508gene16 Contig508gene1437 Contig373gene6801 Rme_3870 Contig70gene3871 Contig203gene2295 DOE annotation DOE blast gi|48769810|ref|ZP_00274154.1| 393 6 1.B.1.4.1(1) 92 5E-20 3 … Seq etc 1.B.1.4.1 protein seq 48770572 203 2295
COG3203: Outer membrane protein (porin) [Ralstonia metallidurans CH34] 1 Contig572gene2544 Contig374gene7003 gi|48770572|ref|ZP_00274915.1| 111 1 1.B.1.4.1(1) 96 6E-22 2 … Seq etc 1.B.1.4.1 protein seq 48767557
COG3203: Outer membrane protein (porin) [Ralstonia metallidurans CH34] 1 Contig601gene24 Contig601gene3250 Contig338gene292 Rme_0704 Contig59gene705 Contig222gene4577 DOE annotation DOE blast gi|48767557|ref|ZP_00271912.1| 382 1 1.B.1.4.1(1) 92 5E-20 3 … Seq etc 1.B.1.4.1 protein seq 222 4577
1 Contig638gene4303 Contig375gene8510 352 0 1.B.1.4.1(1) 121 5E-29 2 … Seq etc 1.B.1.4.1 protein seq 48770268
COG3203: Outer membrane protein (porin) [Ralstonia metallidurans CH34] 1 Contig657gene35 Contig657gene4995 Contig375gene8258 Rme_3594 Contig70gene3595 Contig204gene3188 DOE annotation DOE blast gi|48770268|ref|ZP_00274612.1| 379 1 1.B.1.4.1(1) 99 3E-22 2 … Seq etc 1.B.1.4.1 protein seq 48771981 204 3188
COG3203: Outer membrane protein (porin) [Ralstonia metallidurans CH34] 1 Contig663gene24 Contig663gene5199 Contig375gene8489 Rme_5289 Contig72gene5290 Contig279gene5936 DOE annotation DOE blast gi|48771981|ref|ZP_00276323.1| 355 3 1.B.1.4.1(1) 121 5E-29 2 pMol30 Seq etc 1.B.1.4.1 protein seq 48771744 279 5936
COG3203: Outer membrane protein (porin) [Ralstonia metallidurans CH34] 1 Contig665gene15 Contig665gene5296 Contig375gene9145 Rme_6387 Contig72gene6388 Contig202gene1929 DOE annotation DOE blast gi|48771744|ref|ZP_00276086.1| 353 1 1.B.1.4.1(1) 127 1E-30 2 chromosome Seq etc 1.B.1.4.1 protein seq 202 1929
1 Contig683gene6206 Contig375gene9285 341 0 1.B.1.4.1(1) 3 … Seq etc 1.B.1.4.1 protein seq 48772190
COG3203: Outer membrane protein (porin) [Ralstonia metallidurans CH34] 1 Contig685gene18 Contig685gene6296 Contig354gene1343 Rme_6094 Contig72gene6095 Contig197gene1079 DOE annotation DOE blast gi|48772190|ref|ZP_00276532.1| 377 1 1.B.1.4.1(1) 110 1E-25 2 … Seq etc 1.B.1.4.1 protein seq 48770680 197 1079
COG3203: Outer membrane protein (porin) [Ralstonia metallidurans CH34] 1 Contig694gene92 Contig694gene7116 Contig364gene3106 Rme_4656 Contig71gene4657 Contig197gene989 DOE annotation DOE blast gi|48770680|ref|ZP_00275023.1| 371 1 1.B.1.4.1(1) 147 1E-36 2 … Seq etc 1.B.1.4.1 protein seq 48772376 197 989
COG3203: Outer membrane protein (porin) [Ralstonia metallidurans CH34] 1 Contig695gene58 Contig695gene7190 Contig375gene8681 Rme_5996 Contig72gene5997 Contig204gene3002 DOE annotation DOE blast gi|48772376|ref|ZP_00276718.1| 352 1 1.B.1.4.1(1) 123 2E-29 2 … Seq etc 1.B.1.4.1 protein seq 48770080 204 3002
COG3203: Outer membrane protein (porin) [Ralstonia metallidurans CH34] 1 Contig698gene72 Contig698gene7452 Contig373gene6282 Rme_3468 Contig70gene3469 Contig203gene2567 DOE annotation DOE blast gi|48770080|ref|ZP_00274424.1| 386 1 1.B.1.4.1(1) 99 5E-22 2 … Seq etc 1.B.1.4.1 protein seq 48769353 203 2567
COG3203: Outer membrane protein (porin) [Ralstonia metallidurans CH34] 1 Contig700gene38 Contig700gene7616 Contig371gene5423 Rme_3083 Contig69gene3084 Contig201gene1639 DOE annotation DOE blast gi|48769353|ref|ZP_00273699.1| 391 1 1.B.1.4.1(1) 122 4E-29 2 … Seq etc 1.B.1.4.1 protein seq 48768425 201 1639
COG3203: Outer membrane protein (porin) [Ralstonia metallidurans CH34] 1 Contig707gene65 Contig707gene8395 Contig372gene5670 Rme_2235 Contig66gene2236 Contig204gene2971 DOE annotation DOE blast gi|48768425|ref|ZP_00272775.1| 387 2 1.B.1.4.1(1) 105 6E-24 2 … Seq etc 1.B.1.4.1 protein seq 48768404 204 2971
COG3203: Outer membrane protein (porin) [Ralstonia metallidurans CH34] 1 Contig707gene87 Contig707gene8417 Contig372gene5912 Rme_2290 Contig66gene2291 Contig204gene2951 DOE annotation DOE blast gi|48768404|ref|ZP_00272754.1| 358 0 1.B.1.4.1(1) 111 6E-26 2 … Seq etc 1.B.1.4.1 protein seq 48771299 204 2951
COG3203: Outer membrane protein (porin) [Ralstonia metallidurans CH34] 1 Contig711gene9181 Contig372gene5687 gi|48771299|ref|ZP_00275641.1| 362 0 1.B.1.4.1(1) 131 5E-32 2 …
Seq etc 1.B.1.6.1 protein seq 48770923
COG3203: Outer membrane protein (porin) [Ralstonia metallidurans CH34] Anion-selective porin protein 32 2 Contig343gene4 Contig343gene21 Contig370gene4663 Rme_4143 Contig71gene4144 Contig205gene3578 DOE annotation DOE blast gi|48770923|ref|ZP_00275266.1| 233 0 1.B.1.6.1(1) 53 2E-08 3 chromosome Seq etc 1.B.1.6.1 protein seq 48769988 205 3578
COG3203: Outer membrane protein (porin) [Ralstonia metallidurans CH34] 2 Contig410gene2 Contig410gene353 Contig373gene6196 Rme_3398 Contig70gene3399 Contig203gene2479 DOE annotation DOE blast gi|48769988|ref|ZP_00274332.1| 382 1 1.B.1.6.1(1) 113 2E-26 2 … Seq etc 1.B.1.6.1 protein seq 48767448 203 2479
COG3203: Outer membrane protein (porin) [Ralstonia metallidurans CH34] 2 Contig518gene8 Contig518gene1587 Contig357gene1691 Rme_0571 Contig57gene572 Contig222gene4986 DOE annotation DOE blast gi|48767448|ref|ZP_00271804.1| 374 1 1.B.1.6.1(1) 97 1E-21 2 … Seq etc 1.B.1.6.1 protein seq 48772440 222 4986
COG3203: Outer membrane protein (porin) [Ralstonia metallidurans CH34] 2 Contig656gene12 Contig656gene4938 Contig358gene1746 Rme_5564 Contig72gene5565 Contig219gene4137 DOE annotation DOE blast gi|48772440|ref|ZP_00276782.1| 354 1 1.B.1.6.1(1) 112 3E-26 2 … Seq etc 1.B.1.6.1 protein seq 48772698 219 4137
COG3203: Outer membrane protein (porin) [Ralstonia metallidurans CH34] 2 Contig664gene27 Contig664gene5247 Contig361gene2442 Rme_5810 Contig72gene5811 Contig219gene4392 DOE annotation DOE blast gi|48772698|ref|ZP_00277040.1| 371 1 1.B.1.6.1(1) 103 1E-23 2 … Seq etc 1.B.1.6.1 protein seq 48769927 219 4392
COG3203: Outer membrane protein (porin) [Ralstonia metallidurans CH34] 2 Contig702gene5 Contig702gene7776 Contig373gene6139 Rme_3355 Contig70gene3356 Contig335gene6282 DOE annotation DOE blast gi|48769927|ref|ZP_00274271.1| 355 3 1.B.1.6.1(1) 115 3E-27 2 … Seq etc 1.B.1.6.1 protein seq 48769983 335 6282
COG3203: Outer membrane protein (porin) [Ralstonia metallidurans CH34] 2 Contig702gene63 Contig702gene7834 Contig373gene6638 Rme_3757 Contig70gene3758 Contig203gene2474 DOE annotation DOE blast gi|48769983|ref|ZP_00274327.1| 369 1 1.B.1.6.1(1) 67 2E-12 3 … Seq etc 1.B.1.6.1 protein seq 48769283 203 2474
COG3203: Outer membrane protein (porin) [Ralstonia metallidurans CH34] 2 Contig706gene111 Contig706gene8324 Contig371gene5227 Rme_3253 Contig69gene3254 Contig201gene1571 DOE annotation DOE blast gi|48769283|ref|ZP_00273629.1| 363 1 1.B.1.6.1(1) 99 5E-22 2 … Seq etc 1.B.1.6.1 protein seq 48768986 201 1571
COG3203: Outer membrane protein (porin) [Ralstonia metallidurans CH34] 29 2 Contig709gene35 Contig709gene8617 Contig369gene4254 Rme_2411 Contig67gene2412 Contig279gene6036 DOE annotation DOE blast gi|48768986|ref|ZP_00273333.1| 355 3 1.B.1.6.1(1) 118 5E-28 2 pMol30 Seq etc 1.B.6.1.1 protein seq 48771091 279 6036
1.B.6 Docu  OmpA-OmpF Porin  OOP COG2885: Outer membrane protein and related peptidoglycan-associated ions, small molecules B OmpA porin 1 Contig604gene19 Contig604gene3309 Contig370gene4785 Rme_4222 Contig71gene4223 Contig205gene3419 DOE annotation DOE blast gi|48771091|ref|ZP_00275434.1| 217 0 1.B.6.1.1(1) 99 2E-22 2 chromosome Seq etc 1.B.6.1.2 protein seq 48771178 205 3419
COG2885: Outer membrane protein and related peptidoglycan-associated OmpF porin 1 Contig701gene45 Contig701gene7698 Contig365gene3355 Rme_4276 Contig71gene4277 Contig205gene3336 DOE annotation DOE blast gi|48771178|ref|ZP_00275521.1| 643 2 1.B.6.1.2(1) 69 1E-12 3 … Seq etc 1.B.6.1.3 protein seq 48769891 205 3336
COG1360: Flagellar motor protein [Ralstonia metallidurans CH34] 3 OmpATb porin 1 Contig630gene30 Contig630gene4034 Contig373gene6115 Rme_3335 Contig70gene3336 Contig203gene2381 DOE annotation DOE blast gi|48769891|ref|ZP_00274235.1| 217 1 1.B.6.1.3(1) 55 4E-09 3 … Seq etc 1.B.9.2.1 protein seq 48768068 203 2381
1.B.9 Docu  FadL Outer Membrane Protein  FadL COG2067: Long-chain fatty acid transport protein [Ralstonia metallidurans CH34]  fatty acid, toluene, m-xylene and benzyl alcohol B 1 Toluene/m-xylene outer membrane porin 9 Contig610gene21 Contig610gene3449 Contig343gene479 Rme_1022 Contig61gene1110 Contig205gene3987 DOE annotation DOE blast gi|48768068|ref|ZP_00272419.1| 464 1 1.B.9.2.1(1) 293 2E-80 2 … Seq etc 1.B.11.3.1 protein seq 48771224 205 3987
1.B.11 Docu  Outer Membrane Fimbrial Usher Porin  FUP COG3188: P pilus assembly protein, porin PapC [Ralstonia metallidurans CH34] protein folding and subunit assembly Gram-negative proteobacteria and cyanobacteria Fimbrial usher 10 Contig447gene648 Contig358gene1879 gi|48771224|ref|ZP_00275567.1| 668 0 1.B.11.3.1(1) 274 1E-74 2 … Seq etc 1.B.11.3.1 protein seq 48771224
COG3188: P pilus assembly protein, porin PapC [Ralstonia metallidurans CH34] 10 Contig674gene22 Contig674gene5736 Contig365gene3393 Rme_4305 Contig71gene4306 Contig205gene3290 DOE annotation DOE blast gi|48771224|ref|ZP_00275567.1| 854 1 1.B.11.3.1(1) 417 1E-117 2 … Seq etc 1.B.11.3.1 protein seq 48772201 205 3290
COG3188: P pilus assembly protein, porin PapC [Ralstonia metallidurans CH34] 3 10 Contig685gene51 Contig685gene6329 Contig354gene1279 Rme_5421 Contig72gene5422 Contig197gene1070 DOE annotation DOE blast gi|48772201|ref|ZP_00276543.1| 850 1 1.B.11.3.1(1) 399 1E-112 2 … Seq etc 1.B.12.1.3 protein seq 48771184 197 1070
1.B.12 Docu  Autotransporter  AT COG3210: Large exoproteins involved in heme utilization or adhesion [Ralstonia N-terminal protein domains all but the d-subdivision of the proteobacteria 1 Fluffing protein (Flu) or antigen-43 (Ag-43) 10 Contig701gene52 Contig701gene7705 Contig365gene3360 Rme_4280 Contig71gene4281 Contig205gene3329 DOE annotation DOE blast gi|48771184|ref|ZP_00275527.1| 1741 1 1.B.12.1.3(1) 104 5E-23 2 … Seq etc 1.B.14.1.2 protein seq 48769165 205 3329
1.B.14 Docu  Outer Membrane Receptor  OMR COG1629: Outer membrane receptor proteins, mostly Fe transport [Ralstonia  iron-siderophore complexes, vitamin B12, Cu2+, colicin,DNA of various phage  B (gram neg.) FecA ferric-citrate receptor 1 Contig424gene2 Contig424gene460 Contig374gene7240 Rme_2526 Contig67gene2527 Contig202gene2224 DOE annotation DOE blast gi|48769165|ref|ZP_00273512.1| 733 1 1.B.14.1.2(1) 73 5E-14 3 … Seq etc 1.B.14.1.2 protein seq 48768376 202 2224
COG4772: Outer membrane receptor for Fe3+-dicitrate [Ralstonia metallidurans 1 Contig707gene103 Contig707gene8433 Contig372gene5928 Rme_2303 Contig66gene2304 Contig204gene2923 DOE annotation DOE blast gi|48768376|ref|ZP_00272726.1| 731 1 1.B.14.1.2(1) 521 1E-149 2 … Seq etc 1.B.14.1.2 protein seq 48768375 204 2923
COG4772: Outer membrane receptor for Fe3+-dicitrate [Ralstonia metallidurans 1 Contig707gene105 Contig707gene8435 Contig372gene5930 Rme_2304 Contig66gene2305 Contig204gene2922 DOE annotation DOE blast gi|48768375|ref|ZP_00272725.1| 717 0 1.B.14.1.2(1) 542 1E-155 2 … 204 2922
Seq etc 1.B.14.1.4 protein seq 48770967
COG4774: Outer membrane receptor for monomeric catechols [Ralstonia metallidurans FhuA ferrichrome (also Albomycin; Colicin M; Microcin 25; Phage T5) receptor (transports phage T5 DNA across the outer membrane, dependent on DcrA (SdaC; TC #2.A.42.2.1) and DcrB) 1 Contig494gene2 Contig494gene1213 Contig370gene4894 Rme_4473 Contig71gene4474 Contig205gene3539 DOE annotation DOE blast gi|48770967|ref|ZP_00275310.1| 764 1 1.B.14.1.4(1) 120 3E-28 2 chromosome Seq etc 1.B.14.1.4 protein seq 48772613 205 3539
COG1629: Outer membrane receptor proteins, mostly Fe transport [Ralstonia 1 Contig582gene16 Contig582gene2763 Contig361gene2288 Rme_5665 Contig72gene5666 Contig219gene4311 DOE annotation DOE blast gi|48772613|ref|ZP_00276955.1| 742 1 1.B.14.1.4(1) 119 8E-28 2 … Seq etc 1.B.14.1.4 protein seq 219 4311
1 Contig623gene3771 Contig374gene7149 768 1 1.B.14.1.4(1) 133 4E-32 2 … Seq etc 1.B.14.1.4 protein seq 48769100
COG1629: Outer membrane receptor proteins, mostly Fe transport [Ralstonia 1 Contig623gene3 Contig623gene3773 Contig374gene7151 Rme_2603 Contig67gene2604 Contig202gene2160 DOE annotation DOE blast gi|48769100|ref|ZP_00273447.1| 804 0 1.B.14.1.4(1) 71 2E-13 3 … Seq etc 1.B.14.1.4 protein seq 48767632 202 2160
COG4774: Outer membrane receptor for monomeric catechols [Ralstonia metallidurans 1 Contig632gene16 Contig632gene4091 Contig363gene2909 Rme_0890 Contig60gene891 Contig192gene503 DOE annotation DOE blast gi|48767632|ref|ZP_00271986.1| 753 1 1.B.14.1.4(1) 159 4E-40 2 … Seq etc 1.B.14.1.4 protein seq 48772254 192 503
COG1629: Outer membrane receptor proteins, mostly Fe transport [Ralstonia 1 Contig680gene18 Contig680gene6033 Contig369gene4344 Rme_6059 Contig72gene6060 Contig205gene3796 DOE annotation DOE blast gi|48772254|ref|ZP_00276596.1| 728 1 1.B.14.1.4(1) 175 9E-45 2 … Seq etc 1.B.14.1.4 protein seq 48772258 205 3796
COG1629: Outer membrane receptor proteins, mostly Fe transport [Ralstonia 1 Contig680gene39 Contig680gene6054 Contig369gene4384 Rme_5459 Contig72gene5460 Contig205gene3799 DOE annotation DOE blast gi|48772258|ref|ZP_00276600.1| 761 2 1.B.14.1.4(1) 80 4E-16 3 … Seq etc 1.B.14.1.4 protein seq 48769060 205 3799
COG4774: Outer membrane receptor for monomeric catechols [Ralstonia metallidurans 1 Contig686gene10 Contig686gene6353 Contig375gene8531 Rme_2630 Contig67gene2631 Contig202gene2125 DOE annotation DOE blast gi|48769060|ref|ZP_00273407.1| 741 0 1.B.14.1.4(1) 134 1E-32 2 … 202 2125
Seq etc 1.B.14.1.6 protein seq
CirA colicin I/Fe3+ catecholate receptor 1 Contig357gene77 Contig374gene6949 332 0 1.B.14.1.6(1) 73 3E-14 3 chromosome Seq etc 1.B.14.1.6 protein seq
1 Contig513gene1502 Contig373gene6356 429 0 1.B.14.1.6(1) 104 8E-24 2 …
Seq etc 1.B.14.1.8 protein seq
Ferripyoverdine/pyocin S3 receptor 1 Contig697gene7380 Contig375gene8072 334 1 1.B.14.1.8(1) 86 4E-18 3 chromosome Seq etc 1.B.14.3.1 protein seq 48768736
COG4206: Outer membrane cobalamin receptor protein [Ralstonia metallidurans CH34] BtuB cobalamin receptor (also transports phage C1 DNA across the outer membrane) 1 Contig631gene11 Contig631gene4047 Contig366gene3585 Rme_1525 Contig64gene1526 Contig222gene4794 DOE annotation DOE blast gi|48768736|ref|ZP_00273084.1| 698 1 1.B.14.3.1(1) 206 4E-54 2 … Seq etc 1.B.14.4.1 protein seq 48769070 222 4794
COG1629: Outer membrane receptor proteins, mostly Fe transport [Ralstonia Cu2+-transporting, outer membrane protein C, OprC 1 Contig686gene68 Contig686gene6411 Contig375gene8595 Rme_2477 Contig67gene2478 Contig202gene2133 DOE annotation DOE blast gi|48769070|ref|ZP_00273417.1| 724 0 1.B.14.4.1(1) 736 0 2 … Seq etc 1.B.14.4.2 protein seq 48770481 202 2133
COG1629: Outer membrane receptor proteins, mostly Fe transport [Ralstonia Cu2+-transporting, outer membrane protein, NosA 1 Contig466gene9 Contig466gene863 Contig374gene6949 Rme_3952 Contig71gene3953 Contig222gene5402 DOE annotation DOE blast gi|48770481|ref|ZP_00274824.1| 384 0 1.B.14.4.2(1) 50 3E-07 3 … Seq etc 1.B.14.9.1 protein seq 1296432 222 5402
18 RhtA Rhizobactin 1021 (siderophore) receptor/porin 1 Contig680gene5 Contig680gene6020 Contig369gene4334 Rme_6050 Contig72gene6051 Contig205gene3808 DOE annotation DOE blast gi|1296432|emb|CAA66129.1| 839 1 1.B.14.9.1(1) 258 8E-70 2 … Seq etc 1.B.17.1.1 protein seq 48768807 205 3808
1.B.17 Docu  Outer Membrane Factor  OMF COG1538: Outer membrane protein [Ralstonia metallidurans CH34] heavy metal cations; drugs, oligosaccharides, proteins, etc B (gram neg.) TolC outer membrane exporter of hemolysin, drugs, etc. 7 Contig688gene13 Contig688gene6483 Contig366gene3474 Rme_1739 Contig64gene1740 Contig222gene4723 DOE annotation DOE blast gi|48768807|ref|ZP_00273155.1| 493 0 1.B.17.1.1(1) 215 5E-57 2 … 222 4723
Seq etc 1.B.17.2.1 protein seq 48768968
COG1538: Outer membrane protein [Ralstonia metallidurans CH34] CnrC outer membrane exporter of Ni2+ and Co2+ 1 Contig709gene12 Contig709gene8594 Contig369gene4234 Rme_2394 Contig67gene2395 Contig279gene6053 DOE annotation DOE blast gi|48768968|ref|ZP_00273315.1| 448 1 1.B.17.2.1(1) 348 3E-97 1 pMol30 Seq etc 1.B.17.2.1 protein seq 521152 279 6053
1 Contig712gene9208 Contig368gene3997 gi|521152|gb|AAA21968.1| 418 0 1.B.17.2.1(1) 495 1E-141 1 pMol28
Seq etc 1.B.17.2.2 protein seq
CzcC outer membrane exporter of Co2+, Cd2+, Zn2+ 1 Contig532gene1820 Contig357gene1641 460 0 1.B.17.2.2(1) 94 1E-20 1 chromosome Seq etc 1.B.17.2.2 protein seq 48769403
COG1538: Outer membrane protein [Ralstonia metallidurans CH34] 1 Contig593gene10 Contig593gene3047 Contig371gene5461 Rme_3113 Contig69gene3114 Contig201gene1684 DOE annotation DOE blast gi|48769403|ref|ZP_00273749.1| 411 0 1.B.17.2.2(1) 62 6E-11 3 … Seq etc 1.B.17.2.2 protein seq 48769196 201 1684
COG1538: Outer membrane protein [Ralstonia metallidurans CH34] 1 Contig649gene28 Contig649gene4653 Contig374gene7266 Rme_2546 Contig67gene2547 Contig202gene2255 DOE annotation DOE blast gi|48769196|ref|ZP_00273543.1| 431 1 1.B.17.2.2(1) 415 1E-117 1 … Seq etc 1.B.17.2.2 protein seq 1731916 202 2255
1 Contig663gene14 Contig663gene5189 Contig375gene8615 Rme_6248 Contig72gene6249 Contig279gene5943 DOE annotation DOE blast gi|1731916|emb|CAA67082.1| 418 0 1.B.17.2.2(1) 712 0 1 pMol30 279 5943
Seq etc 1.B.17.2.3 protein seq 48769114
COG1538: Outer membrane protein [Ralstonia metallidurans CH34] CyaE outer membrane exporter of cyclolysin 7 Contig477gene7 Contig477gene991 Contig374gene7202 Rme_2502 Contig67gene2503 Contig202gene2174 DOE annotation DOE blast gi|48769114|ref|ZP_00273461.1| 520 2 1.B.17.2.3(1) 84 3E-17 3 chromosome Seq etc 1.B.17.2.3 protein seq 48769846 202 2174
COG1538: Outer membrane protein [Ralstonia metallidurans CH34] 7 Contig619gene16 Contig619gene3644 Contig373gene6079 Rme_3313 Contig70gene3314 Contig203gene2333 DOE annotation DOE blast gi|48769846|ref|ZP_00274190.1| 295 0 1.B.17.2.3(1) 51 7E-08 3 … 203 2333
Seq etc 1.B.17.3.1 protein seq 48771705
COG1538: Outer membrane protein [Ralstonia metallidurans CH34] NodT2 outer membrane exporter of lipooligosaccharides 11 Contig543gene1 Contig543gene2007 Contig375gene9177 Rme_6403 Contig72gene6404 Contig202gene1966 DOE annotation DOE blast gi|48771705|ref|ZP_00276047.1| 485 0 1.B.17.3.1(1) 129 4E-31 2 chromosome Seq etc 1.B.17.3.1 protein seq 48772090 202 1966
COG1538: Outer membrane protein [Ralstonia metallidurans CH34] 11 Contig670gene3 Contig670gene5520 Contig375gene8190 Rme_6161 Contig72gene6162 Contig204gene3120 DOE annotation DOE blast gi|48772090|ref|ZP_00276432.1| 485 1 1.B.17.3.1(1) 148 8E-37 2 … 204 3120
Seq etc 1.B.17.3.2 protein seq
FusA outer membrane exporter of fusaric acid 7 Contig485gene1098 Contig353gene1195 455 0 1.B.17.3.2(1) 40 0,0002 3 chromosome Seq etc 1.B.17.3.2 protein seq 48769503
COG1538: Outer membrane protein [Ralstonia metallidurans CH34] 7 Contig628gene13 Contig628gene3952 Contig360gene2100 Rme_1802 Contig65gene1803 Contig199gene1194 DOE annotation DOE blast gi|48769503|ref|ZP_00273848.1| 519 0 1.B.17.3.2(1) 217 1E-57 2 … Seq etc 1.B.17.3.2 protein seq 48772223 199 1194
COG1538: Outer membrane protein [Ralstonia metallidurans CH34] 7 Contig637gene34 Contig637gene4290 Contig354gene1322 Rme_6083 Contig72gene6084 Contig197gene1048 DOE annotation DOE blast gi|48772223|ref|ZP_00276565.1| 540 1 1.B.17.3.2(1) 262 3E-71 2 … Seq etc 1.B.17.3.2 protein seq 48770706 197 1048
COG1538: Outer membrane protein [Ralstonia metallidurans CH34] 7 Contig694gene32 Contig694gene7056 Contig364gene3065 Rme_4049 Contig71gene4050 Contig197gene1016 DOE annotation DOE blast gi|48770706|ref|ZP_00275049.1| 504 1 1.B.17.3.2(1) 215 4E-57 2 … 197 1016
Seq etc 1.B.17.3.3 protein seq 48772503
COG1538: Outer membrane protein [Ralstonia metallidurans CH34] OpcM outer membrane exporter of multiple drugs 7 Contig425gene4 Contig425gene468 Contig358gene1809 Rme_5599 Contig72gene5600 Contig219gene4204 DOE annotation DOE blast gi|48772503|ref|ZP_00276845.1| 486 2 1.B.17.3.3(1) 241 7E-65 2 chromosome Seq etc 1.B.17.3.3 protein seq 219 4204
7 Contig458gene775 Contig375gene7574 521 1 1.B.17.3.3(1) 298 4E-82 2 … Seq etc 1.B.17.3.3 protein seq 48768027
COG1538: Outer membrane protein [Ralstonia metallidurans CH34] 7 Contig576gene4 Contig576gene2617 Contig359gene2067 Rme_1196 Contig62gene1197 Contig222gene5610 DOE annotation DOE blast gi|48768027|ref|ZP_00272379.1| 488 1 1.B.17.3.3(1) 159 3E-40 2 … Seq etc 1.B.17.3.3 protein seq 48767261 222 5610
COG1538: Outer membrane protein [Ralstonia metallidurans CH34] 7 Contig609gene20 Contig609gene3424 Contig353gene1181 Rme_5898 Contig72gene5899 Contig219gene4244 DOE annotation DOE blast gi|48767261|ref|ZP_00271620.1| 488 1 1.B.17.3.3(1) 201 6E-53 2 … Seq etc 1.B.17.3.3 protein seq 48770114 219 4244
COG1538: Outer membrane protein [Ralstonia metallidurans CH34] 7 Contig647gene5 Contig647gene4583 Contig373gene6314 Rme_3491 Contig70gene3492 Contig203gene2600 DOE annotation DOE blast gi|48770114|ref|ZP_00274458.1| 518 1 1.B.17.3.3(1) 129 5E-31 2 … Seq etc 1.B.17.3.3 protein seq 48770121 203 2600
COG1538: Outer membrane protein [Ralstonia metallidurans CH34] 7 Contig647gene13 Contig647gene4591 Contig373gene6558 Rme_3715 Contig70gene3716 Contig203gene2605 DOE annotation DOE blast gi|48770121|ref|ZP_00274465.1| 511 3 1.B.17.3.3(1) 107 2E-24 2 … Seq etc 1.B.17.3.3 protein seq 48769031 203 2605
COG1538: Outer membrane protein [Ralstonia metallidurans CH34] 7 Contig686gene35 Contig686gene6378 Contig375gene8564 Rme_2455 Contig67gene2456 Contig202gene2097 DOE annotation DOE blast gi|48769031|ref|ZP_00273378.1| 495 0 1.B.17.3.3(1) 109 4E-25 2 … 202 2097
Seq etc 1.B.17.3.4 protein seq 48772510
COG1538: Outer membrane protein [Ralstonia metallidurans CH34] SilC outer membrane exporter of silver ion, Ag+ 1 Contig561gene8 Contig561gene2339 Contig358gene1815 Rme_5605 Contig72gene5606 Contig219gene4211 DOE annotation DOE blast gi|48772510|ref|ZP_00276852.1| 519 0 1.B.17.3.4(1) 195 6E-51 2 chromosome Seq etc 1.B.17.3.4 protein seq 48770204 219 4211
COG1538: Outer membrane protein [Ralstonia metallidurans CH34] 1 Contig616gene3582 Contig373gene6386 gi|48770204|ref|ZP_00274548.1| 589 0 1.B.17.3.4(1) 55 1E-08 3 … Seq etc 1.B.17.3.4 protein seq 48769738
COG1538: Outer membrane protein [Ralstonia metallidurans CH34] 1 Contig677gene29 Contig677gene5886 Contig362gene2648 Rme_1972 Contig65gene1973 Contig205gene3951 DOE annotation DOE blast gi|48769738|ref|ZP_00274083.1| 512 0 1.B.17.3.4(1) 133 3E-32 2 … 205 3951
Seq etc 1.B.17.3.5 protein seq 48772537
COG1538: Outer membrane protein [Ralstonia metallidurans CH34] CusC outer membrane exporter of copper ion, Cu+ 1 Contig485gene9 Contig485gene1105 Contig353gene1190 Rme_5906 Contig72gene5907 Contig219gene4234 DOE annotation DOE blast gi|48772537|ref|ZP_00276879.1| 497 1 1.B.17.3.5(1) 262 4E-71 2 chromosome Seq etc 1.B.17.3.5 protein seq 48769058 219 4234
COG1538: Outer membrane protein [Ralstonia metallidurans CH34] 1 Contig686gene60 Contig686gene6403 Contig375gene8587 Rme_2471 Contig67gene2472 Contig202gene2123 DOE annotation DOE blast gi|48769058|ref|ZP_00273405.1| 476 0 1.B.17.3.5(1) 108 5E-25 2 … Seq etc 1.B.17.3.5 protein seq 48771529 202 2123
COG1538: Outer membrane protein [Ralstonia metallidurans CH34] 28 1 Contig699gene65 Contig699gene7568 Contig375gene7766 Rme_5053 Contig72gene5054 Contig222gene5261 DOE annotation DOE blast gi|48771529|ref|ZP_00275871.1| 491 2 1.B.17.3.5(1) 275 3E-75 2 … Seq etc 1.B.18.1.2 protein seq 48772383 222 5261
1.B.18 Docu  Outer Membrane Auxiliary Protein OMA COG1596: Periplasmic protein involved in polysaccharide export [Ralstonia exo- or capsular polysaccharide B (gram neg.) OMA protein component of an ABC-type capsular polysaccharide export system 11 Contig695gene49 Contig695gene7181 Contig375gene8672 Rme_5990 Contig72gene5991 Contig204gene2995 DOE annotation DOE blast gi|48772383|ref|ZP_00276725.1| 606 0 1.B.18.1.2(1) 421 1E-119 2 … Seq etc 1.B.18.3.1 protein seq 48768333 204 2995
COG1596: Periplasmic protein involved in polysaccharide export [Ralstonia 2 OMA component of the group 1 K30 capsular polysaccharide export system 11 Contig703gene80 Contig703gene7977 Contig372gene5594 Rme_2187 Contig66gene2188 Contig204gene2881 DOE annotation DOE blast gi|48768333|ref|ZP_00272683.1| 362 0 1.B.18.3.1(1) 199 2E-52 2 … Seq etc 1.B.19.1.1 protein seq 204 2881
1.B.19 Docu  Glucose-selective OprB Porin  OprB ions, small molecules B (gram neg.) 1 Glucose-selective porin 4 Contig659gene5052 Contig359gene1948 492 1 1.B.19.1.1(1) 44 0,00003 3 … Seq etc 1.B.20.1.1 protein seq 48770133
1.B.20 Docu  Two-Partner Secretion  TPS COG2831: Hemolysin activation/secretion protein [Ralstonia metallidurans CH34] proteins B (gram neg.) Outer membrane toxin channel protein, ShlB 7 Contig602gene2 Contig602gene3265 Contig373gene6550 Rme_3707 Contig70gene3708 Contig203gene2617 DOE annotation DOE blast gi|48770133|ref|ZP_00274477.1| 588 0 1.B.20.1.1(1) 135 5E-33 2 … Seq etc 1.B.20.3.1 protein seq 48769229 203 2617
COG2831: Hemolysin activation/secretion protein [Ralstonia metallidurans CH34] 2 Heme-hemopexin utilization protein B precursor 10 Contig689gene70 Contig689gene6629 Contig371gene5256 Rme_3258 Contig69gene3259 Contig201gene1517 DOE annotation DOE blast gi|48769229|ref|ZP_00273575.1| 558 1 1.B.20.3.1(1) 70 2E-13 3 … Seq etc 1.B.22.1.1 protein seq 48769234 201 1517
1.B.22 Docu  Outer Bacterial Membrane Secretin  Secretin COG4964: Flp pilus assembly protein, secretin CpaC [Ralstonia metallidurans CH34] proteins B (gram neg.), V PulD protein secretin 10 Contig689gene30 Contig689gene6589 Contig371gene5305 Rme_2985 Contig69gene2986 Contig201gene1522 DOE annotation DOE blast gi|48769234|ref|ZP_00273580.1| 473 0 1.B.22.1.1(1) 100 2E-22 2 … 201 1522
Seq etc 1.B.22.1.2 protein seq 48771154
COG4964: Flp pilus assembly protein, secretin CpaC [Ralstonia metallidurans CH34] XcpQ secretin protein 10 Contig701gene7678 Contig365gene3336 gi|48771154|ref|ZP_00275497.1| 620 1 1.B.22.1.2(1) 88 2E-18 3 chromosome Seq etc 1.B.22.1.2 protein seq 48771333
COG1450: Type II secretory pathway, component PulD [Ralstonia metallidurans CH34] 10 Contig708gene38 Contig708gene8495 Contig375gene7610 Rme_4960 Contig72gene4961 Contig222gene5069 DOE annotation DOE blast gi|48771333|ref|ZP_00275675.1| 783 1 1.B.22.1.2(1) 218 1E-57 2 … 222 5069
Seq etc 1.B.22.2.1 protein seq 48767800
COG4796: Type II secretory pathway, component HofQ [Ralstonia metallidurans CH34] PilQ fimbrial subunit secretin 10 Contig679gene37 Contig679gene5992 Contig367gene3787 Rme_1425 Contig63gene1426 Contig195gene838 DOE annotation DOE blast gi|48767800|ref|ZP_00272153.1| 710 1 1.B.22.2.1(1) 402 1E-113 2 chromosome Seq etc 1.B.22.4.1 protein seq 48771624 195 838
COG4796: Type II secretory pathway, component HofQ [Ralstonia metallidurans CH34] ComE competence protein secretin 10 Contig642gene23 Contig642gene4440 Contig375gene9238 Rme_6449 Contig72gene6450 Contig202gene2047 DOE annotation DOE blast gi|48771624|ref|ZP_00275966.1| 734 1 1.B.22.4.1(1) 119 5E-28 2 … Seq etc 1.B.22.7.1 protein seq 202 2047
6 Bundle-forming pilus-B (BfpB) secretin (catalyzes export of pilins and EPEC proteins; uptake of vancomycin). (BfpB complex formation requires BfpG, 113 aas; gbBAA84839) 10 Contig712gene9335 Contig368gene4122 600 0 1.B.22.7.1(1) 61 2E-10 3 pMol28 Seq etc 1.B.39.1.1 protein seq 48771530
1.B.39 Docu  Bacterial Porin, OmpW  OmpW COG3047: Outer membrane protein W [Ralstonia metallidurans CH34] methyl viologen and benzyl viologen B (gram neg.) Outer membrane porin, OmpW 7 Contig699gene12 Contig699gene7515 Contig375gene9331 Rme_6516 Contig72gene6517 Contig222gene5262 DOE annotation DOE blast gi|48771530|ref|ZP_00275872.1| 286 1 1.B.39.1.1(1) 55 6E-09 3 chromosome Seq etc 1.B.39.1.1 protein seq 48768299 222 5262
COG3047: Outer membrane protein W [Ralstonia metallidurans CH34] 2 7 Contig704gene87 Contig704gene8080 Contig372gene5565 Rme_2168 Contig66gene2169 Contig204gene2847 DOE annotation DOE blast gi|48768299|ref|ZP_00272649.1| 245 0 1.B.39.1.1(1) 80 8E-17 3 … 204 2847
1.C. Pore-forming toxins (proteins and peptides) … Seq etc 1.C.1.3.1 protein seq 48772540
1.C.1 Docu  Channel-forming Colicin  Colicin COG0845: Membrane-fusion protein [Ralstonia metallidurans CH34] Ions; small molecules  B, plasmids  1 Colicin A 1 Contig485gene6 Contig485gene1102 Contig353gene1187 Rme_5903 Contig72gene5904 Contig219gene4238 DOE annotation DOE blast gi|48772540|ref|ZP_00276882.1| 426 1 1.C.1.3.1(1) 47 0,000002 3 chromosome 219 4238
1.E. Holins … Seq etc 1.E.14.1.1 protein seq 48768630
1.E.14 Docu  LrgA Holin  LrgA Holin COG1380: Putative effector of murein hydrolase LrgA [Ralstonia metallidurans Zn2+, Fe2+  E (Y, Pl, An)  1 LrgA holin-like protein (possibly an antiholin) (Bayles, 2003) 1 Contig639gene7 Contig639gene4317 Contig372gene5735 Rme_2792 Contig68gene2793 Contig194gene637 DOE annotation DOE blast gi|48768630|ref|ZP_00272979.1| 128 3 1.E.14.1.1(1) 52 1E-08 3 chromosome 194 637