Table 3 Putative transport proteins identified in Ralstonia metallidurans
Family Family Abbreviation NCBI COGs (<<NCBI proteins) Typical Substrates Organism Total Number subfamily substrate (see table) Names2000 old Names2000 medium Names 2000 modified Internal Name Names 2003   Accession NCBI Blast Hit   Cluster / Fragment Comp- onent Identity Length (#aa) TMSs (#) Nearest Homolog in TCDB Score E-Value evi- dence location
(1) (2) (3)   (4) (5) (6) (7) (4)   (7) ( . - modified sequence)     Problem       (8) (9) (10) (11) (12) (13) (14) (15)  
1.A. Alpha -Type Channel-forming Proteins and Peptides                                                
1.A.1 Voltage-gated Ion Channel VIC Na+; K+; Ca2+; multiple cations E, A, B Voltage-sensitive K+ channel 1 Contig639gene4314 Contig372gene5732 307 5 1.A.1.2.3(1) 68 8E-13 3 chromosome
COG1226: Kef-type K+ transport systems, predicted NAD-binding component 2 6TMS K+ channel (Kuo et al., 2003) 1 Contig702gene58 Contig702gene7829 Contig373gene6187 Rme_3393 Contig70gene3394 gi|48769979|ref|ZP_00274323.1| 2E-129 229 7 1.A.1.13.1(1) 44 0,00001 3
1.A.8 Major Intrinsic Protein MIP   H2O; glycerol, urea, polyols, NH3, CO2 B, A, E   MIP family homologue 1   Contig710gene8930 Contig375gene7720                 250 6 1.A.8.13.1(1) 46 2E-06 3
      COG0580: Glycerol uptake facilitator and related permeases (Major Intrinsic     2 Aquaporin Z 3   Contig711gene9157 Contig375gene8643       gi|48770597|ref|ZP_00274940.1| 2E-114       234 6 1.A.8.3.1(1) 228 3E-61 2
1.A.11 Chloride Channel ClC COG3448: CBS-domain-containing membrane protein [Ralstonia metallidurans CH34] Cl-, anions B, A, E   Putative Cl- channel 2 Contig598gene7 Contig598gene3160 Contig365gene3384 Rme_4296 Contig71gene4297   gi|48771215|ref|ZP_00275558.1| 0       376 4 1.A.11.6.1(1) 60 2E-10 3
2 Contig598gene3167 Contig365gene3245 657 12 1.A.11.6.1(1) 56 6E-09 3
COG0038: Chloride channel protein EriC [Ralstonia metallidurans CH34] 2 Contig677gene53 Contig677gene5910 Contig352gene1115 Rme_1143 Contig62gene1144 gi|48767917|ref|ZP_00272269.1| 0 560 8 1.A.11.6.1(1) 47 2E-06 3
      COG0038: Chloride channel protein EriC [Ralstonia metallidurans CH34]     4   2 Contig693gene68 Contig693gene7009 Contig367gene3837 Rme_1473 Contig63gene1474   gi|48767745|ref|ZP_00272098.1| 0       522 10 1.A.11.6.1(1) 85 9E-18 3
1.A.20 gp91phox Phagocyte NADPH Oxidase-associated Cytochrome b558 CytB COG4097: Predicted ferric reductase [Ralstonia metallidurans CH34] H+ E (Pl, An) 1 Putative oxido-reductase 1 Contig696gene44 Contig696gene7256 Contig363gene2857 Rme_0854 Contig60gene855 gi|48767686|ref|ZP_00272040.1| 0 447 6 1.A.20.6.1(1) 261 4E-71 2
1.A.22 Large Conductance Mechanosensitive Ion Channel MscL COG1970: Large-conductance mechanosensitive channel [Ralstonia metallidurans Proteins, ions (slightly cation selective) B 1 MscL; catalyzes ion and osmolyte release following osmmotic downshift 1 Contig693gene27 Contig693gene6968 Contig367gene3927 Rme_1346 Contig63gene1347   gi|48767763|ref|ZP_00272116.1| 1,8E-67       144 2 1.A.22.1.3(1) 111 2E-26 2
1.A.23 Small Conductance Mechanosensitive Ion Channel MscS COG3264: Small-conductance mechanosensitive channel [Ralstonia metallidurans Ions (slight anion selectivity) B, A Minor MscS channel protein, KefA 2 Contig545gene10 Contig545gene2048 Contig350gene938 Rme_2885 Contig68gene2886 gi|48768578|ref|ZP_00272927.1| 0 456 6 1.A.23.1.1(1) 92 5E-20 2
COG0668: Small-conductance mechanosensitive channel [Ralstonia metallidurans 2 Contig619gene6 Contig619gene3634 Contig373gene6759 Rme_3845 Contig70gene3846 gi|48769858|ref|ZP_00274202.1| 0 357 4 1.A.23.1.1(1) 49 1E-07 3
COG0668: Small-conductance mechanosensitive channel [Ralstonia metallidurans 2 Contig670gene5 Contig670gene5522 Contig375gene8191 Rme_6162 Contig72gene6163 gi|48772089|ref|ZP_00276431.1| 6E-148 277 3 1.A.23.1.1(1) 50 2E-07 3
COG3264: Small-conductance mechanosensitive channel [Ralstonia metallidurans 2 Contig697gene68 Contig697gene7356 Contig375gene8051 Rme_5244 Contig72gene5245 gi|48771898|ref|ZP_00276240.1| 0 832 9 1.A.23.1.1(1) 127 2E-30 2
0
COG0668: Small-conductance mechanosensitive channel [Ralstonia metallidurans Major MscS channel protein, YggB 2 Contig634gene27 Contig634gene4160 Contig375gene7869 Rme_5115 Contig72gene5116 gi|48771668|ref|ZP_00276010.1| 2E-143 288 4 1.A.23.2.1(1) 114 6E-27 2 chromosome
COG0668: Small-conductance mechanosensitive channel [Ralstonia metallidurans 2 Contig707gene27 Contig707gene8357 Contig372gene5633 Rme_2209 Contig66gene2210 gi|48768379|ref|ZP_00272729.1| 7E-141 284 4 1.A.23.2.1(1) 152 2E-38 2
0
COG0668: Small-conductance mechanosensitive channel [Ralstonia metallidurans The YkuT osmolyte efflux channel 2 Contig640gene3 Contig640gene4349 Contig371gene5100 Rme_3164 Contig69gene3165 gi|48769475|ref|ZP_00273821.1| 0 771 13 1.A.23.3.1(1) 84 3E-17 3 chromosome
0
COG0668: Small-conductance mechanosensitive channel [Ralstonia metallidurans The MscMJ mechanosensitive channel 2 Contig588gene4 Contig588gene2895 Contig358gene1757 Rme_5568 Contig72gene5569 gi|48772457|ref|ZP_00276799.1| 0 452 6 1.A.23.4.1 66 4E-12 3 chromosome
9 2 Contig582gene2756 Contig361gene2514 447 5 1.A.23.4.1(1) 52 7E-08 3
1.A.30 H+- or Na+-translocating Bacterial Flagellar Motor 1ExbBD Outer Membrane Transport Energizer Mot/Exb - Mot COG1291: Flagellar motor component [Ralstonia metallidurans CH34] H+; Na+ B   The flagellar motor (pmf-dependent) (MotA-MotB) 1 Contig505gene5 Contig505gene1379 Contig371gene5340 Rme_3016 Contig69gene3017   gi|48769266|ref|ZP_00273612.1| 3E-145   component 1   311 4 1.A.30.1.1(2) 333 1E-92 2
    COG1360: Flagellar motor protein [Ralstonia metallidurans CH34]     2   1 Contig505gene6 Contig505gene1380 Contig371gene5341 Rme_3017 Contig69gene3018   gi|48769267|ref|ZP_00273613.1| 9E-159   component 2   325 1 1.A.30.1.1(2) 288 2E-79 2
1.A.33 Cation Channel-forming Heat Shock Protein-70 Hsp70 Ions, polypeptides E, B, A Heat shock protein-70 homologue, DnaK 1 Contig499gene1282 .Contig370gene5054 N-term.fragm. 352 0 1.A.33.1.2(1) 244 4E-66 2
COG0443: Molecular chaperone [Ralstonia metallidurans CH34] 1 Contig499gene6 Contig499gene1283 .Contig370gene5054 Rme_4596 Contig71gene4597 gi|48770776|ref|ZP_00275119.1| 0 C-term.fragm 271 0 1.A.33.1.2(1) 192 1E-50 2
3 1 Contig639gene4346 Contig372gene5852 643 0 1.A.33.1.2(1) 872 0 2
1.A.35 CorA Metal Ion Transporter MIT COG0598: Mg2+ and Co2+ transporters [Ralstonia metallidurans CH34] Heavy-metal ions, Mg2+, Mn2+, Co2+, Ni2+, Fe2+; Al3+; Mn2+ B, A, E   Divalent cation (Mg2+, Co2+ and Ni2+) transport system, CorA 1 Contig696gene74 Contig696gene7286 Contig363gene2888 Rme_0875 Contig60gene876   gi|48767654|ref|ZP_00272008.1| 6E-180       320 2 1.A.35.1.2(1) 269 1E-73 2
0
COG0598: Mg2+ and Co2+ transporters [Ralstonia metallidurans CH34] Divalent metal ion (Mg2+, Ca2+, Ni2+, etc.) transporter 1 Contig572gene15 Contig572gene2547 Contig374gene7317 Rme_4724 Contig71gene4725 gi|48770568|ref|ZP_00274911.1| 0 383 3 1.A.35.3.1(1) 93 2E-20 3 chromosome
1 Contig645gene4531 Contig365gene3224 362 3 1.A.35.3.1(1) 55 8E-09 3
COG0598: Mg2+ and Co2+ transporters [Ralstonia metallidurans CH34] 4 1 Contig679gene53 Contig679gene6008 Contig367gene3951 Rme_1353 Contig63gene1354 gi|48767819|ref|ZP_00272172.1| 0 393 2 1.A.35.3.1(1) 54 2E-08 3
                                0                    
1.B Outer Membrane Porins ( - structure) 0
1.B.1 General Bacterial Porin GBP COG3203: Outer membrane protein (porin) [Ralstonia metallidurans CH34] ions, small (Mr of <1000 Da) molecules B, A, plastids   Omp porin 1 Contig420gene6 Contig420gene434 Contig358gene1907 Rme_5960 Contig72gene5961   gi|48772451|ref|ZP_00276793.1| 0       367 1 1.B.1.4.1(1) 120 1E-28 2 chromosome
1 Contig453gene712 Contig340gene366 470 4 1.B.1.4.1(1) 94 2E-20 3
1 Contig485gene1110 .00Dec2000-Contig485gene1110 231 3 1.B.1.4.1(1) 75 2E-15 3
COG3203: Outer membrane protein (porin) [Ralstonia metallidurans CH34] 1 Contig508gene4 Contig508gene1425 Contig373gene6049 Rme_3290 Contig70gene3291 gi|48769813|ref|ZP_00274157.1| 0 381 1 1.B.1.4.1(1) 90 2E-19 3
COG3203: Outer membrane protein (porin) [Ralstonia metallidurans CH34] 1 Contig508gene16 Contig508gene1437 Contig373gene6801 Rme_3870 Contig70gene3871 gi|48769810|ref|ZP_00274154.1| 0 393 6 1.B.1.4.1(1) 92 5E-20 3
COG3203: Outer membrane protein (porin) [Ralstonia metallidurans CH34] 1 Contig572gene2544 Contig374gene7003 gi|48770572|ref|ZP_00274915.1| 1,8E-58 111 1 1.B.1.4.1(1) 96 6E-22 2
COG3203: Outer membrane protein (porin) [Ralstonia metallidurans CH34] 1 Contig601gene24 Contig601gene3250 Contig338gene292 Rme_0704 Contig59gene705 gi|48767557|ref|ZP_00271912.1| 0 382 1 1.B.1.4.1(1) 92 5E-20 3
1 Contig638gene4303 Contig375gene8510 352 0 1.B.1.4.1(1) 121 5E-29 2
COG3203: Outer membrane protein (porin) [Ralstonia metallidurans CH34] 1 Contig657gene35 Contig657gene4995 Contig375gene8258 Rme_3594 Contig70gene3595 gi|48770268|ref|ZP_00274612.1| 0 379 1 1.B.1.4.1(1) 99 3E-22 2
COG3203: Outer membrane protein (porin) [Ralstonia metallidurans CH34] 1 Contig663gene24 Contig663gene5199 Contig375gene8489 Rme_5289 Contig72gene5290 gi|48771981|ref|ZP_00276323.1| 0 355 3 1.B.1.4.1(1) 121 5E-29 2 pMol30
COG3203: Outer membrane protein (porin) [Ralstonia metallidurans CH34] 1 Contig665gene15 Contig665gene5296 Contig375gene9145 Rme_6387 Contig72gene6388 gi|48771744|ref|ZP_00276086.1| 0 353 1 1.B.1.4.1(1) 127 1E-30 2 chromosome
1 Contig683gene6206 Contig375gene9285 341 0 1.B.1.4.1(1) 3
COG3203: Outer membrane protein (porin) [Ralstonia metallidurans CH34] 1 Contig685gene18 Contig685gene6296 Contig354gene1343 Rme_6094 Contig72gene6095 gi|48772190|ref|ZP_00276532.1| 0 377 1 1.B.1.4.1(1) 110 1E-25 2
COG3203: Outer membrane protein (porin) [Ralstonia metallidurans CH34] 1 Contig694gene92 Contig694gene7116 Contig364gene3106 Rme_4656 Contig71gene4657 gi|48770680|ref|ZP_00275023.1| 0 371 1 1.B.1.4.1(1) 147 1E-36 2
COG3203: Outer membrane protein (porin) [Ralstonia metallidurans CH34] 1 Contig695gene58 Contig695gene7190 Contig375gene8681 Rme_5996 Contig72gene5997 gi|48772376|ref|ZP_00276718.1| 0 352 1 1.B.1.4.1(1) 123 2E-29 2
COG3203: Outer membrane protein (porin) [Ralstonia metallidurans CH34] 1 Contig698gene72 Contig698gene7452 Contig373gene6282 Rme_3468 Contig70gene3469 gi|48770080|ref|ZP_00274424.1| 0 386 1 1.B.1.4.1(1) 99 5E-22 2
COG3203: Outer membrane protein (porin) [Ralstonia metallidurans CH34] 1 Contig700gene38 Contig700gene7616 Contig371gene5423 Rme_3083 Contig69gene3084 gi|48769353|ref|ZP_00273699.1| 0 391 1 1.B.1.4.1(1) 122 4E-29 2
COG3203: Outer membrane protein (porin) [Ralstonia metallidurans CH34] 1 Contig707gene65 Contig707gene8395 Contig372gene5670 Rme_2235 Contig66gene2236 gi|48768425|ref|ZP_00272775.1| 0 387 2 1.B.1.4.1(1) 105 6E-24 2
COG3203: Outer membrane protein (porin) [Ralstonia metallidurans CH34] 1 Contig707gene87 Contig707gene8417 Contig372gene5912 Rme_2290 Contig66gene2291 gi|48768404|ref|ZP_00272754.1| 0 358 0 1.B.1.4.1(1) 111 6E-26 2
COG3203: Outer membrane protein (porin) [Ralstonia metallidurans CH34] 1 Contig711gene9181 Contig372gene5687 gi|48771299|ref|ZP_00275641.1| 0 362 0 1.B.1.4.1(1) 131 5E-32 2
0
COG3203: Outer membrane protein (porin) [Ralstonia metallidurans CH34] Anion-selective porin protein 32 2 Contig343gene4 Contig343gene21 Contig370gene4663 Rme_4143 Contig71gene4144 gi|48770923|ref|ZP_00275266.1| 5E-122 233 0 1.B.1.6.1(1) 53 2E-08 3 chromosome
COG3203: Outer membrane protein (porin) [Ralstonia metallidurans CH34] 2 Contig410gene2 Contig410gene353 Contig373gene6196 Rme_3398 Contig70gene3399 gi|48769988|ref|ZP_00274332.1| 0 382 1 1.B.1.6.1(1) 113 2E-26 2
COG3203: Outer membrane protein (porin) [Ralstonia metallidurans CH34] 2 Contig518gene8 Contig518gene1587 Contig357gene1691 Rme_0571 Contig57gene572 gi|48767448|ref|ZP_00271804.1| 0 374 1 1.B.1.6.1(1) 97 1E-21 2
COG3203: Outer membrane protein (porin) [Ralstonia metallidurans CH34] 2 Contig656gene12 Contig656gene4938 Contig358gene1746 Rme_5564 Contig72gene5565 gi|48772440|ref|ZP_00276782.1| 0 354 1 1.B.1.6.1(1) 112 3E-26 2
COG3203: Outer membrane protein (porin) [Ralstonia metallidurans CH34] 2 Contig664gene27 Contig664gene5247 Contig361gene2442 Rme_5810 Contig72gene5811 gi|48772698|ref|ZP_00277040.1| 0 371 1 1.B.1.6.1(1) 103 1E-23 2
COG3203: Outer membrane protein (porin) [Ralstonia metallidurans CH34] 2 Contig702gene5 Contig702gene7776 Contig373gene6139 Rme_3355 Contig70gene3356 gi|48769927|ref|ZP_00274271.1| 0 355 3 1.B.1.6.1(1) 115 3E-27 2
COG3203: Outer membrane protein (porin) [Ralstonia metallidurans CH34] 2 Contig702gene63 Contig702gene7834 Contig373gene6638 Rme_3757 Contig70gene3758 gi|48769983|ref|ZP_00274327.1| 0 369 1 1.B.1.6.1(1) 67 2E-12 3
COG3203: Outer membrane protein (porin) [Ralstonia metallidurans CH34] 2 Contig706gene111 Contig706gene8324 Contig371gene5227 Rme_3253 Contig69gene3254 gi|48769283|ref|ZP_00273629.1| 0 363 1 1.B.1.6.1(1) 99 5E-22 2
      COG3203: Outer membrane protein (porin) [Ralstonia metallidurans CH34]     29   2 Contig709gene35 Contig709gene8617 Contig369gene4254 Rme_2411 Contig67gene2412   gi|48768986|ref|ZP_00273333.1| 0       355 3 1.B.1.6.1(1) 118 5E-28 2 pMol30
1.B.6 OmpA-OmpF Porin OOP COG2885: Outer membrane protein and related peptidoglycan-associated ions, small molecules B OmpA porin 1 Contig604gene19 Contig604gene3309 Contig370gene4785 Rme_4222 Contig71gene4223 gi|48771091|ref|ZP_00275434.1| 3E-102 217 0 1.B.6.1.1(1) 99 2E-22 2 chromosome
COG2885: Outer membrane protein and related peptidoglycan-associated OmpF porin 1 Contig701gene45 Contig701gene7698 Contig365gene3355 Rme_4276 Contig71gene4277 gi|48771178|ref|ZP_00275521.1| 0 643 2 1.B.6.1.2(1) 69 1E-12 3
COG1360: Flagellar motor protein [Ralstonia metallidurans CH34] 3 OmpATb porin 1 Contig630gene30 Contig630gene4034 Contig373gene6115 Rme_3335 Contig70gene3336 gi|48769891|ref|ZP_00274235.1| 3E-101 217 1 1.B.6.1.3(1) 55 4E-09 3
1.B.9 FadL Outer Membrane Protein FadL COG2067: Long-chain fatty acid transport protein [Ralstonia metallidurans CH34] fatty acid, toluene, m-xylene and benzyl alcohol B 1 Toluene/m-xylene outer membrane porin 9 Contig610gene21 Contig610gene3449 Contig343gene479 Rme_1022 Contig61gene1110   gi|48768068|ref|ZP_00272419.1| 0       464 1 1.B.9.2.1(1) 293 2E-80 2
1.B.11 Outer Membrane Fimbrial Usher Porin FUP COG3188: P pilus assembly protein, porin PapC [Ralstonia metallidurans CH34] protein folding and subunit assembly Gram-negative proteobacteria and cyanobacteria Fimbrial usher 10 Contig447gene648 Contig358gene1879 gi|48771224|ref|ZP_00275567.1| 8E-110 668 0 1.B.11.3.1(1) 274 1E-74 2
COG3188: P pilus assembly protein, porin PapC [Ralstonia metallidurans CH34] 10 Contig674gene22 Contig674gene5736 Contig365gene3393 Rme_4305 Contig71gene4306 gi|48771224|ref|ZP_00275567.1| 0 854 1 1.B.11.3.1(1) 417 1E-117 2
COG3188: P pilus assembly protein, porin PapC [Ralstonia metallidurans CH34] 3 10 Contig685gene51 Contig685gene6329 Contig354gene1279 Rme_5421 Contig72gene5422 gi|48772201|ref|ZP_00276543.1| 0 850 1 1.B.11.3.1(1) 399 1E-112 2
1.B.12 Autotransporter AT COG3210: Large exoproteins involved in heme utilization or adhesion [Ralstonia N-terminal protein domains all but the d-subdivision of the proteobacteria 1 Fluffing protein (Flu) or antigen-43 (Ag-43) 10 Contig701gene52 Contig701gene7705 Contig365gene3360 Rme_4280 Contig71gene4281   gi|48771184|ref|ZP_00275527.1| 0       1741 1 1.B.12.1.3(1) 104 5E-23 2
1.B.14 Outer Membrane Receptor OMR COG1629: Outer membrane receptor proteins, mostly Fe transport [Ralstonia iron-siderophore complexes, vitamin B12, Cu2+, colicin,DNA of various phage B (gram neg.) FecA ferric-citrate receptor 1 Contig424gene2 Contig424gene460 Contig374gene7240 Rme_2526 Contig67gene2527 gi|48769165|ref|ZP_00273512.1| 0 733 1 1.B.14.1.2(1) 73 5E-14 3
COG4772: Outer membrane receptor for Fe3+-dicitrate [Ralstonia metallidurans 1 Contig707gene103 Contig707gene8433 Contig372gene5928 Rme_2303 Contig66gene2304 gi|48768376|ref|ZP_00272726.1| 0 731 1 1.B.14.1.2(1) 521 1E-149 2
COG4772: Outer membrane receptor for Fe3+-dicitrate [Ralstonia metallidurans 1 Contig707gene105 Contig707gene8435 Contig372gene5930 Rme_2304 Contig66gene2305 gi|48768375|ref|ZP_00272725.1| 0 717 0 1.B.14.1.2(1) 542 1E-155 2
0
COG4774: Outer membrane receptor for monomeric catechols [Ralstonia metallidurans FhuA ferrichrome (also Albomycin; Colicin M; Microcin 25; Phage T5) receptor (transports phage T5 DNA across the outer membrane, dependent on DcrA (SdaC; TC #2.A.42.2.1) and DcrB) 1 Contig494gene2 Contig494gene1213 Contig370gene4894 Rme_4473 Contig71gene4474 gi|48770967|ref|ZP_00275310.1| 0 764 1 1.B.14.1.4(1) 120 3E-28 2 chromosome
COG1629: Outer membrane receptor proteins, mostly Fe transport [Ralstonia 1 Contig582gene16 Contig582gene2763 Contig361gene2288 Rme_5665 Contig72gene5666 gi|48772613|ref|ZP_00276955.1| 0 742 1 1.B.14.1.4(1) 119 8E-28 2
1 Contig623gene3771 Contig374gene7149 768 1 1.B.14.1.4(1) 133 4E-32 2
COG1629: Outer membrane receptor proteins, mostly Fe transport [Ralstonia 1 Contig623gene3 Contig623gene3773 Contig374gene7151 Rme_2603 Contig67gene2604 gi|48769100|ref|ZP_00273447.1| 0 804 0 1.B.14.1.4(1) 71 2E-13 3
COG4774: Outer membrane receptor for monomeric catechols [Ralstonia metallidurans 1 Contig632gene16 Contig632gene4091 Contig363gene2909 Rme_0890 Contig60gene891 gi|48767632|ref|ZP_00271986.1| 0 753 1 1.B.14.1.4(1) 159 4E-40 2
COG1629: Outer membrane receptor proteins, mostly Fe transport [Ralstonia 1 Contig680gene18 Contig680gene6033 Contig369gene4344 Rme_6059 Contig72gene6060 gi|48772254|ref|ZP_00276596.1| 0 728 1 1.B.14.1.4(1) 175 9E-45 2
COG1629: Outer membrane receptor proteins, mostly Fe transport [Ralstonia 1 Contig680gene39 Contig680gene6054 Contig369gene4384 Rme_5459 Contig72gene5460 gi|48772258|ref|ZP_00276600.1| 0 761 2 1.B.14.1.4(1) 80 4E-16 3
COG4774: Outer membrane receptor for monomeric catechols [Ralstonia metallidurans 1 Contig686gene10 Contig686gene6353 Contig375gene8531 Rme_2630 Contig67gene2631 gi|48769060|ref|ZP_00273407.1| 0 741 0 1.B.14.1.4(1) 134 1E-32 2
0
CirA colicin I/Fe3+ catecholate receptor 1 Contig357gene77 Contig374gene6949 332 0 1.B.14.1.6(1) 73 3E-14 3 chromosome
1 Contig513gene1502 Contig373gene6356 429 0 1.B.14.1.6(1) 104 8E-24 2
0
Ferripyoverdine/pyocin S3 receptor 1 Contig697gene7380 Contig375gene8072 334 1 1.B.14.1.8(1) 86 4E-18 3 chromosome
COG4206: Outer membrane cobalamin receptor protein [Ralstonia metallidurans CH34] BtuB cobalamin receptor (also transports phage C1 DNA across the outer membrane) 1 Contig631gene11 Contig631gene4047 Contig366gene3585 Rme_1525 Contig64gene1526 gi|48768736|ref|ZP_00273084.1| 0 698 1 1.B.14.3.1(1) 206 4E-54 2
COG1629: Outer membrane receptor proteins, mostly Fe transport [Ralstonia Cu2+-transporting, outer membrane protein C, OprC 1 Contig686gene68 Contig686gene6411 Contig375gene8595 Rme_2477 Contig67gene2478 gi|48769070|ref|ZP_00273417.1| 0 724 0 1.B.14.4.1(1) 736 0 2
COG1629: Outer membrane receptor proteins, mostly Fe transport [Ralstonia Cu2+-transporting, outer membrane protein, NosA 1 Contig466gene9 Contig466gene863 Contig374gene6949 Rme_3952 Contig71gene3953 gi|48770481|ref|ZP_00274824.1| 0 384 0 1.B.14.4.2(1) 50 3E-07 3
18 RhtA Rhizobactin 1021 (siderophore) receptor/porin 1 Contig680gene5 Contig680gene6020 Contig369gene4334 Rme_6050 Contig72gene6051 gi|1296432|emb|CAA66129.1| 0 839 1 1.B.14.9.1(1) 258 8E-70 2
1.B.17 Outer Membrane Factor OMF COG1538: Outer membrane protein [Ralstonia metallidurans CH34] heavy metal cations; drugs, oligosaccharides, proteins, etc B (gram neg.)   TolC outer membrane exporter of hemolysin, drugs, etc. 7 Contig688gene13 Contig688gene6483 Contig366gene3474 Rme_1739 Contig64gene1740   gi|48768807|ref|ZP_00273155.1| 0       493 0 1.B.17.1.1(1) 215 5E-57 2
0
COG1538: Outer membrane protein [Ralstonia metallidurans CH34] CnrC outer membrane exporter of Ni2+ and Co2+ 1 Contig709gene12 Contig709gene8594 Contig369gene4234 Rme_2394 Contig67gene2395 gi|48768968|ref|ZP_00273315.1| 4E-133 448 1 1.B.17.2.1(1) 348 3E-97 1 pMol30
1 Contig712gene9208 Contig368gene3997 gi|521152|gb|AAA21968.1| 3E-141 418 0 1.B.17.2.1(1) 495 1E-141 1 pMol28
0
CzcC outer membrane exporter of Co2+, Cd2+, Zn2+ 1 Contig532gene1820 Contig357gene1641 460 0 1.B.17.2.2(1) 94 1E-20 1 chromosome
COG1538: Outer membrane protein [Ralstonia metallidurans CH34] 1 Contig593gene10 Contig593gene3047 Contig371gene5461 Rme_3113 Contig69gene3114 gi|48769403|ref|ZP_00273749.1| 0 411 0 1.B.17.2.2(1) 62 6E-11 3
COG1538: Outer membrane protein [Ralstonia metallidurans CH34] 1 Contig649gene28 Contig649gene4653 Contig374gene7266 Rme_2546 Contig67gene2547 gi|48769196|ref|ZP_00273543.1| 0 431 1 1.B.17.2.2(1) 415 1E-117 1
1 Contig663gene14 Contig663gene5189 Contig375gene8615 Rme_6248 Contig72gene6249 gi|1731916|emb|CAA67082.1| 0 418 0 1.B.17.2.2(1) 712 0 1 pMol30
0
COG1538: Outer membrane protein [Ralstonia metallidurans CH34] CyaE outer membrane exporter of cyclolysin 7 Contig477gene7 Contig477gene991 Contig374gene7202 Rme_2502 Contig67gene2503 gi|48769114|ref|ZP_00273461.1| 0 520 2 1.B.17.2.3(1) 84 3E-17 3 chromosome
COG1538: Outer membrane protein [Ralstonia metallidurans CH34] 7 Contig619gene16 Contig619gene3644 Contig373gene6079 Rme_3313 Contig70gene3314 gi|48769846|ref|ZP_00274190.1| 2E-136 295 0 1.B.17.2.3(1) 51 7E-08 3
0
COG1538: Outer membrane protein [Ralstonia metallidurans CH34] NodT2 outer membrane exporter of lipooligosaccharides 11 Contig543gene1 Contig543gene2007 Contig375gene9177 Rme_6403 Contig72gene6404 gi|48771705|ref|ZP_00276047.1| 0 485 0 1.B.17.3.1(1) 129 4E-31 2 chromosome
COG1538: Outer membrane protein [Ralstonia metallidurans CH34] 11 Contig670gene3 Contig670gene5520 Contig375gene8190 Rme_6161 Contig72gene6162 gi|48772090|ref|ZP_00276432.1| 0 485 1 1.B.17.3.1(1) 148 8E-37 2
0
FusA outer membrane exporter of fusaric acid 7 Contig485gene1098 Contig353gene1195 455 0 1.B.17.3.2(1) 40 0,0002 3 chromosome
COG1538: Outer membrane protein [Ralstonia metallidurans CH34] 7 Contig628gene13 Contig628gene3952 Contig360gene2100 Rme_1802 Contig65gene1803 gi|48769503|ref|ZP_00273848.1| 0 519 0 1.B.17.3.2(1) 217 1E-57 2
COG1538: Outer membrane protein [Ralstonia metallidurans CH34] 7 Contig637gene34 Contig637gene4290 Contig354gene1322 Rme_6083 Contig72gene6084 gi|48772223|ref|ZP_00276565.1| 0 540 1 1.B.17.3.2(1) 262 3E-71 2
COG1538: Outer membrane protein [Ralstonia metallidurans CH34] 7 Contig694gene32 Contig694gene7056 Contig364gene3065 Rme_4049 Contig71gene4050 gi|48770706|ref|ZP_00275049.1| 0 504 1 1.B.17.3.2(1) 215 4E-57 2
0
COG1538: Outer membrane protein [Ralstonia metallidurans CH34] OpcM outer membrane exporter of multiple drugs 7 Contig425gene4 Contig425gene468 Contig358gene1809 Rme_5599 Contig72gene5600 gi|48772503|ref|ZP_00276845.1| 0 486 2 1.B.17.3.3(1) 241 7E-65 2 chromosome
7 Contig458gene775 Contig375gene7574 521 1 1.B.17.3.3(1) 298 4E-82 2
COG1538: Outer membrane protein [Ralstonia metallidurans CH34] 7 Contig576gene4 Contig576gene2617 Contig359gene2067 Rme_1196 Contig62gene1197 gi|48768027|ref|ZP_00272379.1| 0 488 1 1.B.17.3.3(1) 159 3E-40 2
COG1538: Outer membrane protein [Ralstonia metallidurans CH34] 7 Contig609gene20 Contig609gene3424 Contig353gene1181 Rme_5898 Contig72gene5899 gi|48767261|ref|ZP_00271620.1| 1,4E-83 488 1 1.B.17.3.3(1) 201 6E-53 2
COG1538: Outer membrane protein [Ralstonia metallidurans CH34] 7 Contig647gene5 Contig647gene4583 Contig373gene6314 Rme_3491 Contig70gene3492 gi|48770114|ref|ZP_00274458.1| 0 518 1 1.B.17.3.3(1) 129 5E-31 2
COG1538: Outer membrane protein [Ralstonia metallidurans CH34] 7 Contig647gene13 Contig647gene4591 Contig373gene6558 Rme_3715 Contig70gene3716 gi|48770121|ref|ZP_00274465.1| 0 511 3 1.B.17.3.3(1) 107 2E-24 2
COG1538: Outer membrane protein [Ralstonia metallidurans CH34] 7 Contig686gene35 Contig686gene6378 Contig375gene8564 Rme_2455 Contig67gene2456 gi|48769031|ref|ZP_00273378.1| 0 495 0 1.B.17.3.3(1) 109 4E-25 2
0
COG1538: Outer membrane protein [Ralstonia metallidurans CH34] SilC outer membrane exporter of silver ion, Ag+ 1 Contig561gene8 Contig561gene2339 Contig358gene1815 Rme_5605 Contig72gene5606 gi|48772510|ref|ZP_00276852.1| 0 519 0 1.B.17.3.4(1) 195 6E-51 2 chromosome
COG1538: Outer membrane protein [Ralstonia metallidurans CH34] 1 Contig616gene3582 Contig373gene6386 gi|48770204|ref|ZP_00274548.1| 0 589 0 1.B.17.3.4(1) 55 1E-08 3
COG1538: Outer membrane protein [Ralstonia metallidurans CH34] 1 Contig677gene29 Contig677gene5886 Contig362gene2648 Rme_1972 Contig65gene1973 gi|48769738|ref|ZP_00274083.1| 0 512 0 1.B.17.3.4(1) 133 3E-32 2
0
COG1538: Outer membrane protein [Ralstonia metallidurans CH34] CusC outer membrane exporter of copper ion, Cu+ 1 Contig485gene9 Contig485gene1105 Contig353gene1190 Rme_5906 Contig72gene5907 gi|48772537|ref|ZP_00276879.1| 0 497 1 1.B.17.3.5(1) 262 4E-71 2 chromosome
COG1538: Outer membrane protein [Ralstonia metallidurans CH34] 1 Contig686gene60 Contig686gene6403 Contig375gene8587 Rme_2471 Contig67gene2472 gi|48769058|ref|ZP_00273405.1| 0 476 0 1.B.17.3.5(1) 108 5E-25 2
      COG1538: Outer membrane protein [Ralstonia metallidurans CH34]     28   1 Contig699gene65 Contig699gene7568 Contig375gene7766 Rme_5053 Contig72gene5054   gi|48771529|ref|ZP_00275871.1| 0       491 2 1.B.17.3.5(1) 275 3E-75 2
1.B.18 Outer Membrane Auxiliary Protein OMA COG1596: Periplasmic protein involved in polysaccharide export [Ralstonia exo- or capsular polysaccharide B (gram neg.) OMA protein component of an ABC-type capsular polysaccharide export system 11 Contig695gene49 Contig695gene7181 Contig375gene8672 Rme_5990 Contig72gene5991 gi|48772383|ref|ZP_00276725.1| 0 606 0 1.B.18.1.2(1) 421 1E-119 2
COG1596: Periplasmic protein involved in polysaccharide export [Ralstonia 2 OMA component of the group 1 K30 capsular polysaccharide export system 11 Contig703gene80 Contig703gene7977 Contig372gene5594 Rme_2187 Contig66gene2188 gi|48768333|ref|ZP_00272683.1| 0 362 0 1.B.18.3.1(1) 199 2E-52 2
1.B.19 Glucose-selective OprB Porin OprB   ions, small molecules B (gram neg.) 1 Glucose-selective porin 4   Contig659gene5052 Contig359gene1948                 492 1 1.B.19.1.1(1) 44 0,00003 3
1.B.20 Two-Partner Secretion TPS COG2831: Hemolysin activation/secretion protein [Ralstonia metallidurans CH34] proteins B (gram neg.) Outer membrane toxin channel protein, ShlB 7 Contig602gene2 Contig602gene3265 Contig373gene6550 Rme_3707 Contig70gene3708 gi|48770133|ref|ZP_00274477.1| 0 588 0 1.B.20.1.1(1) 135 5E-33 2
COG2831: Hemolysin activation/secretion protein [Ralstonia metallidurans CH34] 2 Heme-hemopexin utilization protein B precursor 10 Contig689gene70 Contig689gene6629 Contig371gene5256 Rme_3258 Contig69gene3259 gi|48769229|ref|ZP_00273575.1| 0 558 1 1.B.20.3.1(1) 70 2E-13 3
1.B.22 Outer Bacterial Membrane Secretin Secretin COG4964: Flp pilus assembly protein, secretin CpaC [Ralstonia metallidurans CH34] proteins B (gram neg.), V   PulD protein secretin 10 Contig689gene30 Contig689gene6589 Contig371gene5305 Rme_2985 Contig69gene2986   gi|48769234|ref|ZP_00273580.1| 0       473 0 1.B.22.1.1(1) 100 2E-22 2
0
COG4964: Flp pilus assembly protein, secretin CpaC [Ralstonia metallidurans CH34] XcpQ secretin protein 10 Contig701gene7678 Contig365gene3336 gi|48771154|ref|ZP_00275497.1| 0 620 1 1.B.22.1.2(1) 88 2E-18 3 chromosome
COG1450: Type II secretory pathway, component PulD [Ralstonia metallidurans CH34] 10 Contig708gene38 Contig708gene8495 Contig375gene7610 Rme_4960 Contig72gene4961 gi|48771333|ref|ZP_00275675.1| 0 783 1 1.B.22.1.2(1) 218 1E-57 2
0
COG4796: Type II secretory pathway, component HofQ [Ralstonia metallidurans CH34] PilQ fimbrial subunit secretin 10 Contig679gene37 Contig679gene5992 Contig367gene3787 Rme_1425 Contig63gene1426 gi|48767800|ref|ZP_00272153.1| 0 710 1 1.B.22.2.1(1) 402 1E-113 2 chromosome
COG4796: Type II secretory pathway, component HofQ [Ralstonia metallidurans CH34] ComE competence protein secretin 10 Contig642gene23 Contig642gene4440 Contig375gene9238 Rme_6449 Contig72gene6450 gi|48771624|ref|ZP_00275966.1| 0 734 1 1.B.22.4.1(1) 119 5E-28 2
            6 Bundle-forming pilus-B (BfpB) secretin (catalyzes export of pilins and EPEC proteins; uptake of vancomycin). (BfpB complex formation requires BfpG, 113 aas; gbBAA84839) 10   Contig712gene9335 Contig368gene4122                 600 0 1.B.22.7.1(1) 61 2E-10 3 pMol28
1.B.39 Bacterial Porin, OmpW OmpW COG3047: Outer membrane protein W [Ralstonia metallidurans CH34] methyl viologen and benzyl viologen B (gram neg.) Outer membrane porin, OmpW 7 Contig699gene12 Contig699gene7515 Contig375gene9331 Rme_6516 Contig72gene6517 gi|48771530|ref|ZP_00275872.1| 2E-144 286 1 1.B.39.1.1(1) 55 6E-09 3 chromosome
COG3047: Outer membrane protein W [Ralstonia metallidurans CH34] 2 7 Contig704gene87 Contig704gene8080 Contig372gene5565 Rme_2168 Contig66gene2169 gi|48768299|ref|ZP_00272649.1| 1E-117 245 0 1.B.39.1.1(1) 80 8E-17 3
                                0                    
1.C. Pore-forming toxins (proteins and peptides)                             0                  
1.C.1 Channel-forming Colicin Colicin COG0845: Membrane-fusion protein [Ralstonia metallidurans CH34] Ions; small molecules B, plasmids 1 Colicin A 1 Contig485gene6 Contig485gene1102 Contig353gene1187 Rme_5903 Contig72gene5904 gi|48772540|ref|ZP_00276882.1| 0 426 1 1.C.1.3.1(1) 47 2E-06 3 chromosome
                                0                    
1.E. Holins                             0                  
1.E.14 LrgA Holin LrgA Holin COG1380: Putative effector of murein hydrolase LrgA [Ralstonia metallidurans Zn2+, Fe2+ E (Y, Pl, An) 1 LrgA holin-like protein (possibly an antiholin) (Bayles, 2003) 1 Contig639gene7 Contig639gene4317 Contig372gene5735 Rme_2792 Contig68gene2793 gi|48768630|ref|ZP_00272979.1| 5,8E-69 128 3 1.E.14.1.1(1) 52 1E-08 3 chromosome
                                0                    
2.A. Carrier type Facilitators                             0                  
2.A.1 Major Facilitator Superfamily MFS Various small molecules B, A, E 0
0
- SP (1) COG0477: Permeases of the major facilitator superfamily [Ralstonia metallidurans suggars B, A, E 1 Putative sugar transporter 4 Contig684gene6 Contig684gene6233 Contig373gene6468 Rme_3646 Contig70gene3647   gi|48770242|ref|ZP_00274586.1| 0       484 12 2.A.1.1.15(1) 77 3E-15 3 chromosome
- DHA1 (12 spanner) (2) drugs COG0477: Permeases of the major facilitator superfamily [Ralstonia metallidurans B, E Tetracycline:H+ antiporter 7 Contig669gene15 Contig669gene5493 Contig374gene7546 Rme_4908 Contig71gene4909 gi|48770291|ref|ZP_00274634.1| 0 418 12 2.A.1.2.4(1) 63 4E-11 3
7 Contig542gene1999 Contig358gene1790 340 10 2.A.1.2.4(1) 37 0,001 3
0
COG0477: Permeases of the major facilitator superfamily [Ralstonia metallidurans (Bicyclomycin, sulfathiazole, tetracycline, fosfomycin, acriflavin, etc.):H+ antiporter 7 Contig468gene10 Contig468gene888 Contig370gene4856 Rme_4450 Contig71gene4451 gi|48771027|ref|ZP_00275370.1| 0 418 12 2.A.1.2.7(1) 122 3E-29 2 chromosome
COG0477: Permeases of the major facilitator superfamily [Ralstonia metallidurans 7 Contig634gene15 Contig634gene4148 Contig375gene9203 Rme_6421 Contig72gene6422 gi|48771669|ref|ZP_00276011.1| 0 426 11 2.A.1.2.7(1) 238 5E-64 2
0
(Hydrophobic uncoupler e.g., CCCP, benzalkonium, SDS):H+ antiporter 7 Contig539gene1940 Contig369gene4402 482 10 2.A.1.2.9(1) Eval < 1e-02 Eval < 1e-02 3 chromosome
0
COG0477: Permeases of the major facilitator superfamily [Ralstonia metallidurans (Spermidine; fluoroquinolones, acriflavin, chloramphenicol, ethidium bromide, etc.):H+ antiporter 7 Contig646gene30 Contig646gene4571 Contig375gene8690 Rme_0093 Contig42gene89 gi|48766975|ref|ZP_00271345.1| 7E-172 408 12 2.A.1.2.8(1) 38 0,001 3 pMol30
COG0477: Permeases of the major facilitator superfamily [Ralstonia metallidurans 7 Contig700gene34 Contig700gene7612 Contig371gene5419 Rme_3079 Contig69gene3080 gi|48769349|ref|ZP_00273695.1| 0 415 12 2.A.1.2.8(1) 45 0,00001 3 chromosome
0
COG0477: Permeases of the major facilitator superfamily [Ralstonia metallidurans Quinolone (and other drug):H+ antiporter 7 Contig570gene2503 Contig373gene6337 gi|48770145|ref|ZP_00274489.1| 0 404 12 2.A.1.2.10(1) 59 7E-10 3 chromosome
hypothetical protein [Ralstonia metallidurans CH34] 7 Contig692gene26 Contig692gene6899 Contig373gene6438 Rme_0445 Contig55gene446 gi|56068712|emb|CAI11274.1| 3E-169 275 6 2.A.1.2.10(1) 63 2E-11 3 pMol30
COG0477: Permeases of the major facilitator superfamily [Ralstonia metallidurans 7 Contig695gene1 Contig695gene7133 Contig375gene8780 Rme_5512 Contig72gene5513 gi|48772354|ref|ZP_00276696.1| 0 408 12 2.A.1.2.10(1) 37 0,002 3 chromosome
COG0477: Permeases of the major facilitator superfamily [Ralstonia metallidurans 7 Contig709gene8744 Contig369gene4487 gi|48768977|ref|ZP_00273324.1| 0 426 11 2.A.1.2.10(1) 40 0,0002 3 pMol30
0
COG2814: Arabinose efflux permease [Ralstonia metallidurans CH34] Putative arabinose efflux porter 7 Contig513gene2 Contig513gene1498 Contig373gene6352 Rme_3516 Contig70gene3517 gi|48770161|ref|ZP_00274505.1| 6E-162 388 12 2.A.1.2.14(1) 178 4E-46 2 chromosome
COG2814: Arabinose efflux permease [Ralstonia metallidurans CH34] 7 Contig697gene21 Contig697gene7309 Contig375gene9023 Rme_6299 Contig72gene6300 gi|48771901|ref|ZP_00276243.1| 0 421 12 2.A.1.2.14(1) 189 3E-49 2
COG0477: Permeases of the major facilitator superfamily [Ralstonia metallidurans 7 Contig708gene46 Contig708gene8503 Contig375gene7618 Rme_4967 Contig72gene4968 gi|48771341|ref|ZP_00275683.1| 5E-162 400 12 2.A.1.2.14(1) 40 0,0002 3
0
COG0477: Permeases of the major facilitator superfamily [Ralstonia metallidurans Lactose and melibiose (>>IPTG) efflux pump, SotB 7 Contig710gene8934 Contig375gene7724 gi|48771485|ref|ZP_00275827.1| 0 398 12 2.A.1.2.18(1) 60 2E-10 3 chromosome
0
COG0477: Permeases of the major facilitator superfamily [Ralstonia metallidurans 16 The fosfomycin resistance protein, YceE 7 Contig680gene9 Contig680gene6024 Contig369gene4338 Rme_6054 Contig72gene6055 gi|48772264|ref|ZP_00276606.1| 3E-158 395 12 2.A.1.2.20(1) 42 0,00005 3 chromosome
- DHA2 (14 spanner) (3) drugs COG0477: Permeases of the major facilitator superfamily [Ralstonia metallidurans   B, E   (CCCP, nalidixic acid, rhodamine 6G, methylviologen, deoxycholate, SDS, organomercurials, etc.):H+ antiporter 7 Contig628gene15 Contig628gene3954 Contig360gene2102 Rme_1804 Contig65gene1805   gi|48769505|ref|ZP_00273850.1| 0       537 14 2.A.1.3.2(1) 533 1E-152 2
COG0477: Permeases of the major facilitator superfamily [Ralstonia metallidurans 7 Contig656gene29 Contig656gene4955 Contig358gene1921 Rme_5971 Contig72gene5972 gi|48772436|ref|ZP_00276778.1| 0 532 14 2.A.1.3.2(1) 302 3E-83 2
COG0477: Permeases of the major facilitator superfamily [Ralstonia metallidurans 7 Contig694gene34 Contig694gene7058 Contig364gene3067 Rme_4051 Contig71gene4052 gi|48770708|ref|ZP_00275051.1| 0 519 14 2.A.1.3.2(1) 518 1E-148 2
0
(Pristinamycin I and II, rifamycin, etc.):H+ antiporter 7 Contig672gene5646 Contig366gene3427 395 5 2.A.1.3.5(1) 54 1E-08 3 chromosome
COG0477: Permeases of the major facilitator superfamily [Ralstonia metallidurans 7 Contig683gene12 Contig683gene6195 Contig375gene7796 Rme_5072 Contig72gene5073 gi|48771569|ref|ZP_00275911.1| 0 528 14 2.A.1.3.5(1) 126 3E-30 2
0
COG0477: Permeases of the major facilitator superfamily [Ralstonia metallidurans Puromycin:H+ antiporter 7 Contig490gene7 Contig490gene1166 Contig339gene328 Rme_0977 Contig61gene1065 gi|48768184|ref|ZP_00272535.1| 0 480 14 2.A.1.3.11(1) 144 1E-35 2 chromosome
COG0477: Permeases of the major facilitator superfamily [Ralstonia metallidurans Tetracenomycin:H+ antiporter 7 Contig595gene5 Contig595gene3093 Contig335gene226 Rme_0233 Contig49gene233 gi|48766946|ref|ZP_00271318.1| 0 548 14 2.A.1.3.12(1) 153 2E-38 2
0
COG0477: Permeases of the major facilitator superfamily [Ralstonia metallidurans The trimethoprim-sensitivity protein, YebQ (increases sensitivity to trimethoprim) 7 Contig508gene14 Contig508gene1435 Contig373gene6800 Rme_3869 Contig70gene3870 gi|48769811|ref|ZP_00274155.1| 0 504 14 2.A.1.3.17(1) 60 3E-10 3 chromosome
COG0477: Permeases of the major facilitator superfamily [Ralstonia metallidurans 7 Contig577gene13 Contig577gene2647 Contig374gene7112 Rme_2573 Contig67gene2574 gi|48769144|ref|ZP_00273491.1| 0 490 14 2.A.1.3.17(1) 389 1E-109 2
COG0477: Permeases of the major facilitator superfamily [Ralstonia metallidurans 7 Contig648gene22 Contig648gene4619 Contig375gene8085 Rme_5270 Contig72gene5271 gi|48771938|ref|ZP_00276280.1| 0 473 14 2.A.1.3.17(1) 397 1E-112 2
COG0477: Permeases of the major facilitator superfamily [Ralstonia metallidurans 7 Contig698gene102 Contig698gene7482 Contig373gene6605 Rme_3739 Contig70gene3740 gi|48770036|ref|ZP_00274380.1| 0 513 14 2.A.1.3.17(1) 127 1E-30 2
0
COG0477: Permeases of the major facilitator superfamily [Ralstonia metallidurans Efflux pump for plant-bacterial signaling molecules, phytoalexins, flavenoids and salicylate as well as drugs, RmrB 7 Contig568gene7 Contig568gene2459 Contig351gene1053 Rme_1096 Contig61gene974 gi|48768147|ref|ZP_00272498.1| 0 508 14 2.A.1.3.18(1) 141 1E-34 2 chromosome
COG0477: Permeases of the major facilitator superfamily [Ralstonia metallidurans 7 Contig670gene2 Contig670gene5519 Contig375gene8189 Rme_6160 Contig72gene6161 gi|48772091|ref|ZP_00276433.1| 0 524 13 2.A.1.3.18(1) 342 3E-95 2
COG0477: Permeases of the major facilitator superfamily [Ralstonia metallidurans 7 Contig686gene30 Contig686gene6373 Contig375gene8551 Rme_2644 Contig67gene2645 gi|48769028|ref|ZP_00273375.1| 0 545 14 2.A.1.3.18(1) 274 1E-74 2
  COG0477: Permeases of the major facilitator superfamily [Ralstonia metallidurans     15   7 Contig689gene91 Contig689gene6650 Contig371gene5277 Rme_3275 Contig69gene3276   gi|48769203|ref|ZP_00273549.1| 0       525 14 2.A.1.3.18(1) 76 4E-15 3
- OPA (4) COG0477: Permeases of the major facilitator superfamily [Ralstonia metallidurans suggars , glycerol B, E 1 Microsomal glucose-6-P transporter (glycogen storage disease (GSD1b); Gierke's disease protein) 4 Contig708gene44 Contig708gene8501 Contig375gene7616 Rme_4966 Contig72gene4967 gi|48771340|ref|ZP_00275682.1| 0 417 12 2.A.1.4.5(1) 40 0,0003 3
- MHS (6)   dicarboxyllates, tricarboxylates B   Citrate:H+ symporter 6   Contig364gene117 Contig373gene6395                 274 7 2.A.1.6.1(1) 146 1E-36 2
COG0477: Permeases of the major facilitator superfamily [Ralstonia metallidurans 6 Contig516gene4 Contig516gene1545 Contig361gene2390 Rme_5733 Contig72gene5734 gi|48772737|ref|ZP_00277079.1| 0 429 12 2.A.1.6.1(1) 531 1E-152 2
COG0477: Permeases of the major facilitator superfamily [Ralstonia metallidurans 6 Contig611gene6 Contig611gene3472 Contig374gene7196 Rme_2496 Contig67gene2497 gi|48769109|ref|ZP_00273456.1| 0 476 12 2.A.1.6.1(1) 197 1E-51 2
COG0477: Permeases of the major facilitator superfamily [Ralstonia metallidurans 6 Contig667gene15 Contig667gene5389 Contig375gene8112 Rme_5285 Contig72gene5286 gi|48771972|ref|ZP_00276314.1| 0 436 12 2.A.1.6.1(1) 179 3E-46 2
COG0477: Permeases of the major facilitator superfamily [Ralstonia metallidurans 6 Contig684gene6257 .Contig373gene6395 gi|48770214|ref|ZP_00274558.1| 2,6E-77 177 5 2.A.1.6.1(1) 61 4E-11 3
COG0477: Permeases of the major facilitator superfamily [Ralstonia metallidurans 6 Contig685gene55 Contig685gene6333 Contig354gene1283 Rme_5425 Contig72gene5426 gi|48772205|ref|ZP_00276547.1| 5E-146 262 7 2.A.1.6.1(1) 135 2E-33 2
COG0477: Permeases of the major facilitator superfamily [Ralstonia metallidurans 6 Contig707gene64 Contig707gene8394 Contig372gene5669 Rme_2234 Contig66gene2235 gi|48768424|ref|ZP_00272774.1| 0 443 12 2.A.1.6.1(1) 223 1E-59 2
COG0477: Permeases of the major facilitator superfamily [Ralstonia metallidurans 6 Contig708gene49 Contig708gene8506 Contig375gene7621 Rme_4968 Contig72gene4969 gi|48771344|ref|ZP_00275686.1| 0 461 12 2.A.1.6.1(1) 265 5E-72 2
0
COG0477: Permeases of the major facilitator superfamily [Ralstonia metallidurans Dicarboxylate:H+ symporter 6 Contig704gene69 Contig704gene8062 Contig372gene5548 Rme_2154 Contig66gene2155 gi|48768279|ref|ZP_00272629.1| 0 437 12 2.A.1.6.3(1) 570 1E-164 2 chromosome
(Poline/glycine-betaine):(H+/Na+) symporter (also transports taurine, ectoine, pipecolate, proline-betaine, N,N-dimethylglycine, carnitine, and 1-carboxymethyl-pyridinium) (subject to osmotic activation) 6 Contig677gene5906 .Contig352gene1110 168 3 2.A.1.6.4(1) 42 0,00001 3
0
4-Methyl-o-phthalate:H+ symporter 6 Contig456gene757 Contig358gene1834 N-term.fragm. 387 6 2.A.1.6.5(1) 185 4E-48 2 chromosome
COG0477: Permeases of the major facilitator superfamily [Ralstonia metallidurans 6 Contig456gene6 Contig456gene758 Contig358gene1835 Rme_5620 Contig72gene5621 gi|48772529|ref|ZP_00276871.1| 2E-112 C-term.fragm 214 6 2.A.1.6.5(1) 100 8E-23 2
6 Contig677gene5905 Contig352gene1110 422 9 2.A.1.6.5(1) 171 7E-44 2
0
Shikimate:H+ symporter 6 Contig495gene1226 Contig373gene6129 465 8 2.A.1.6.6(1) 196 2E-51 2 chromosome
        15   6   Contig711gene9056 Contig375gene8177                 439 12 2.A.1.6.6(1) 159 3E-40 2
- NNP (8) COG2223: Nitrate/nitrite transporter [Ralstonia metallidurans CH34] nitrate, nitrit B, E Nitrate transporter 2 Contig655gene47 Contig655gene4926 Contig375gene7921 Rme_5153 Contig72gene5154 gi|48771727|ref|ZP_00276069.1| 6E-160 437 12 2.A.1.8.4(1) 150 2E-37 2
0
COG2223: Nitrate/nitrite transporter [Ralstonia metallidurans CH34] The 24 TMS, 2 domain, NarK1-NarK2 porter (NarK1 = a NO3-/H+ symporter; NarK2 = a NO3-/NO2- antiporter) 2 Contig651gene11 Contig651gene4728 Contig360gene2126 Rme_1813 Contig65gene1814 gi|48769549|ref|ZP_00273894.1| 0 component 1 427 12 2.A.1.8.11(1) 305 2E-84 2 chromosome
COG2223: Nitrate/nitrite transporter [Ralstonia metallidurans CH34] 3 2 Contig651gene12 Contig651gene4729 Contig360gene2127 Rme_1814 Contig65gene1815 gi|48769550|ref|ZP_00273895.1| 0 component 2 460 12 2.A.1.8.11(1) 528 1E-151 2
- OFA (11) COG0477: Permeases of the major facilitator superfamily [Ralstonia metallidurans Oxalate, Formate B   The oxalate:formate antiporter 6 Contig381gene7 Contig381gene194 Contig364gene3127 Rme_4673 Contig71gene4674   gi|48770657|ref|ZP_00275000.1| 0       441 12 2.A.1.11.1(1) 191 7E-50 2
6 Contig586gene2852 Contig355gene1391 1472 12 2.A.1.11.1(1) 69 3E-12 3
  COG0477: Permeases of the major facilitator superfamily [Ralstonia metallidurans     3   6 Contig589gene12 Contig589gene2933 Contig357gene1707 Rme_0584 Contig57gene585   gi|48767430|ref|ZP_00271786.1| 0       475 12 2.A.1.11.1(1) 92 6E-20 3
- SHS (12) COG0477: Permeases of the major facilitator superfamily [Ralstonia metallidurans Sialate, lactate, pyruvate B, E 1 The sialic acid porter 4 Contig596gene9 Contig596gene3113 Contig359gene2081 Rme_1208 Contig62gene1209 gi|48768047|ref|ZP_00272399.1| 0 397 12 2.A.1.12.1(1) 45 6E-06 3
- ACS (14) COG0477: Permeases of the major facilitator superfamily [Ralstonia metallidurans organic acids B, E   Glucarate porter 4 Contig485gene12 Contig485gene1108 Contig353gene1192 Rme_5908 Contig72gene5909   gi|48772535|ref|ZP_00276877.1| 0       443 12 2.A.1.14.1(1) 74 2E-14 3
COG0477: Permeases of the major facilitator superfamily [Ralstonia metallidurans 4 Contig553gene14 Contig553gene2192 Contig375gene9216 Rme_6431 Contig72gene6432 gi|48771652|ref|ZP_00275994.1| 0 453 12 2.A.1.14.1(1) 602 1E-173 2
COG0477: Permeases of the major facilitator superfamily [Ralstonia metallidurans 4 Contig613gene4 Contig613gene3518 Contig371gene5115 Rme_3173 Contig69gene3174 gi|48769456|ref|ZP_00273802.1| 0 433 12 2.A.1.14.1(1) 164 9E-42 2
COG0477: Permeases of the major facilitator superfamily [Ralstonia metallidurans 4 Contig645gene3 Contig645gene4523 Contig365gene3217 Rme_4321 Contig71gene4322 gi|48771257|ref|ZP_00275600.1| 0 444 12 2.A.1.14.1(1) 101 1E-22 2
0
COG0477: Permeases of the major facilitator superfamily [Ralstonia metallidurans Hexuronate (glucuronate; galacturonate) 4 Contig701gene113 Contig701gene7766 Contig365gene3305 Rme_4381 Contig71gene4382 gi|48771140|ref|ZP_00275483.1| 0 418 12 2.A.1.14.2(1) 64 2E-11 3 chromosome
0
COG0477: Permeases of the major facilitator superfamily [Ralstonia metallidurans Putative tartrate porter 4 Contig607gene18 Contig607gene3376 Contig346gene689 Rme_5675 Contig72gene5676 gi|48772632|ref|ZP_00276974.1| 0 398 11 2.A.1.14.3(1) 348 2E-97 2 chromosome
COG0477: Permeases of the major facilitator superfamily [Ralstonia metallidurans 4 Contig664gene10 Contig664gene5230 Contig361gene2423 Rme_5795 Contig72gene5796 gi|48772714|ref|ZP_00277056.1| 0 441 12 2.A.1.14.3(1) 386 1E-108 2
0
COG0477: Permeases of the major facilitator superfamily [Ralstonia metallidurans Phthalate porter 4 Contig576gene15 Contig576gene2628 Contig359gene1940 Rme_1219 Contig62gene1220 gi|48768033|ref|ZP_00272385.1| 0 453 12 2.A.1.14.8(1) 313 1E-86 2 chromosome
        9   4   Contig711gene9053 Contig375gene8175                 432 12 2.A.1.14.8(1) 51 1E-07 3
- AAHS (15) COG0477: Permeases of the major facilitator superfamily [Ralstonia metallidurans aromatic acids B 4-Hydroxybenzoate/protocatachuate porter 9 Contig694gene38 Contig694gene7062 Contig364gene3071 Rme_4055 Contig71gene4056 gi|48770714|ref|ZP_00275057.1| 0 413 12 2.A.1.15.1(1) 49 5E-07 3
COG0477: Permeases of the major facilitator superfamily [Ralstonia metallidurans 9 Contig697gene80 Contig697gene7368 Contig375gene8062 Rme_5251 Contig72gene5252 gi|48771913|ref|ZP_00276255.1| 3E-172 459 12 2.A.1.15.1(1) 380 1E-107 2
COG0477: Permeases of the major facilitator superfamily [Ralstonia metallidurans 9 Contig706gene14 Contig706gene8227 Contig371gene5360 Rme_3034 Contig69gene3035 gi|48769287|ref|ZP_00273633.1| 0 441 12 2.A.1.15.1(1) 401 1E-113 2
0
2,4-Dichlorophenoxyacetate porter 9 Contig630gene4020 Contig373gene6741 275 8 2.A.1.15.3(1) 40 0,0001 3 chromosome
COG0477: Permeases of the major facilitator superfamily [Ralstonia metallidurans 5 cis,cis-muconate porter, MucK 9 Contig708gene118 Contig708gene8575 Contig375gene9515 Rme_0402 Contig54gene402 gi|48767276|ref|ZP_00271635.1| 0 441 12 2.A.1.15.4(1) 156 3E-39 2
- CP (17) COG0477: Permeases of the major facilitator superfamily [Ralstonia metallidurans cyanate B 1 Cyanate transport system 7 Contig643gene4 Contig643gene4448 Contig370gene4875 Rme_4460 Contig71gene4461   gi|48770998|ref|ZP_00275341.1| 0       423 12 2.A.1.17.1(1) 41 0,0001 3
- OCT (19) organic cations E 1 The polyspecific organic anion, cation and neutral molecule transporter, Oat1 (Slc22a6) (transports neutral compounds such as cardiac glycosides [i.e., ouabain] and steroids [i.e., aldosterone; cortisol; dexamethasone]; cationic compounds such as N-propylaj- 6 Contig508gene1424 Contig373gene6048 500 11 2.A.1.19.4(1) 134 9E-33 2
- SET (20) COG0477: Permeases of the major facilitator superfamily [Ralstonia metallidurans suggars B 1 Efflux system for lactose and glucose, but not IPTG or galactose 4 Contig413gene6 Contig413gene376 .Contig373gene6742 Rme_3829 Contig70gene3830   gi|48769880|ref|ZP_00274224.1| 2E-113       200 5 2.A.1.20.2(1) 44 4E-06 3
- DHA3 (12 spanner) (21) drugs   B 1 The tetracycline resistance determinant, TetV 7   Contig568gene2466 Contig351gene976                 493 12 2.A.1.21.3(1) 51 1E-07 3
- VNT (22) COG0477: Permeases of the major facilitator superfamily [Ralstonia metallidurans neurotransmitter E 1 Synaptic vesicle neurotransmitter (e.g., dopamine) transporter 15 Contig655gene37 Contig655gene4916 Contig375gene7913 Rme_5147 Contig72gene5148   gi|48771722|ref|ZP_00276064.1| 0       514 12 2.A.1.22.1(1) 86 7E-18 3
- BST (23) COG0477: Permeases of the major facilitator superfamily [Ralstonia metallidurans unknown E 1 Conjugated bile salt:H+ symporter, CbsT1 13 Contig670gene8 Contig670gene5525 Contig375gene8194 Rme_6164 Contig72gene6165   gi|48767541|ref|ZP_00271896.1| 3E-100       436 12 2.A.1.23.1(1) 42 0,00005 3
- PAT (25) COG0477: Permeases of the major facilitator superfamily [Ralstonia metallidurans peptides, AcCoA B, E 1 Cell wall degradation product (peptides and glycopeptides including N-acetylglucosaminyl -1,4-anhydro-N-acetyl-muramyl-tripeptide) as well as penicillin derivative uptake porter, AmpG 10 Contig690gene56 Contig690gene6710 Contig374gene6932 Rme_3942 Contig71gene3943   gi|48770458|ref|ZP_00274801.1| 0       466 12 2.A.1.25.2(1) 495 1E-141 2
- UMC-term.fragm (26) unknown B 1 41.4 KDa Protein, YcaD 17   Contig712gene9423 Contig368gene4202                 413 12 2.A.1.26.1(1) 46 4E-06 3 pMol28
- PPP (27) COG0477: Permeases of the major facilitator superfamily [Ralstonia metallidurans phenylpropionate B 1 The phenylpropionate porter, HcaT 9 Contig491gene11 Contig491gene1178 Contig369gene4405 Rme_5471 Contig72gene5472   gi|48772289|ref|ZP_00276631.1| 8E-172       365 11 2.A.1.27.1(1) 108 6E-25 2 chromosome
- ADT (30) COG0477: Permeases of the major facilitator superfamily [Ralstonia metallidurans Abietane Diterpenoid B 1 Putative abietane uptake permease (in gene cluster for degradation of abietane diterpenoids), DitE 7 Contig707gene24 Contig707gene8354 Contig372gene5630 Rme_2207 Contig66gene2208   gi|48768377|ref|ZP_00272727.1| 6E-178       468 12 2.A.1.30.1(1) 92 5E-20 3
- Nre (31) COG0477: Permeases of the major facilitator superfamily [Ralstonia metallidurans Ni2+ B 1 The Ni2+ efflux pump, NreB (Ni2+ inductible) 1 Contig709gene16 Contig709gene8598 Contig369gene4238 Rme_2398 Contig67gene2399   gi|48768972|ref|ZP_00273319.1| 0       408 12 2.A.1.31.1(1) 517 1E-148 2 pMol30
- Fsr (35) COG0477: Permeases of the major facilitator superfamily [Ralstonia metallidurans Fosmidomycin B 1 The fosmidomycin resistance (Fsr) protein (confers fosmidomycin, trimethoprim and carbonylcyanide m-chlorophenylhydrazone (CCCP) resistance) 7 Contig683gene17 Contig683gene6200 Contig375gene7801 Rme_5077 Contig72gene5078   gi|48771575|ref|ZP_00275917.1| 0       409 12 2.A.1.35.1(1) 434 1E-123 2 chromosome
- AtoE (37) COG0477: Permeases of the major facilitator superfamily [Ralstonia metallidurans short chain fatty B, A   The putative short chain fatty acid uptake transporter (closest to family 2.A.1.3) 6 Contig546gene6 Contig546gene2061 Contig364gene2968 Rme_0477 Contig56gene478   gi|48767359|ref|ZP_00271716.1| 0       467 14 2.A.1.37.1(1) 347 6E-97 2
  total 83   COG0477: Permeases of the major facilitator superfamily [Ralstonia metallidurans     2   6 Contig599gene19 Contig599gene3190 Contig375gene9151 Rme_6391 Contig72gene6392   gi|48771736|ref|ZP_00276078.1| 0       484 14 2.A.1.37.1(1) 400 1E-112 2
2.A.3 Amino Acid-Polyamine-Organocation APC Amino acids, polyamines, choline B, A, E 0
0
- AAA (1) COG0833: Amino acid transporters [Ralstonia metallidurans CH34] Amino acids B Lysine:H+ symporter 5 Contig446gene2 Contig446gene639 Contig361gene2312 Rme_5679 Contig72gene5680 gi|48772650|ref|ZP_00276992.1| 0 493 12 2.A.3.1.2(1) 616 1E-178 2 chromosome
COG0833: Amino acid transporters [Ralstonia metallidurans CH34] 5 Contig661gene17 Contig661gene5106 Contig375gene8013 Rme_5222 Contig72gene5223 gi|48771840|ref|ZP_00276182.1| 0 510 12 2.A.3.1.2(1) 726 0 2
0
COG1113: Gamma-aminobutyrate permease and related permeases [Ralstonia Aromatic amino acid:H+ symporter 5 Contig661gene14 Contig661gene5103 Contig375gene8010 Rme_5220 Contig72gene5221 gi|48771838|ref|ZP_00276180.1| 0 462 12 2.A.3.1.3(1) 577 1E-166 2 chromosome
0
COG1113: Gamma-aminobutyrate permease and related permeases [Ralstonia Histidine permease HutT 5 Contig434gene6 Contig434gene545 Contig373gene6637 Rme_3756 Contig70gene3757 gi|48769984|ref|ZP_00274328.1| 0 475 12 2.A.3.1.9(1) 314 8E-87 2 chromosome
COG1113: Gamma-aminobutyrate permease and related permeases [Ralstonia 5 5 Contig619gene3 Contig619gene3631 Contig373gene6757 Rme_3843 Contig70gene3844 gi|48769860|ref|ZP_00274204.1| 0 474 12 2.A.3.1.9(1) 582 1E-167 2
total 6 - CAT (3) COG0531: Amino acid transporters [Ralstonia metallidurans CH34] Cationic Amino Acids E 1 System Y+ high affinity basic amino acid transporter (CAT1) (ecotropic retrovival leukemia virus receptor (ERR)) (transports arginine, lysine and ornithine; Na+-independent) 5 Contig705gene92 Contig705gene8177 Contig374gene7465 Rme_4848 Contig71gene4849 gi|48770397|ref|ZP_00274740.1| 0 469 14 2.A.3.3.1(1) 236 2E-63 2
2.A.4 Cation Diffusion Facilitator CDF   Cd2+, Co2+, Zn2+ B, A, E   Cd2+, Zn2+, Co2+ efflux permease 1 Contig663gene18 Contig663gene5193 Contig375gene8618 Rme_6251 Contig72gene6252   gi|1403126|emb|CAA67085.1| 2E-150       316 5 2.A.4.1.1(1) 525 1E-150 1 pMol30
COG0053: Predicted Co/Zn/Cd cation transporters [Ralstonia metallidurans CH34] 1 Contig708gene76 Contig708gene8533 Contig375gene9479 Rme_6629 Contig72gene6630 gi|48771347|ref|ZP_00275689.1| 2E-144 337 6 2.A.4.1.1(1) 51 8E-08 3 chromosome
0
      COG1230: Co/Zn/Cd efflux system component [Ralstonia metallidurans CH34]     3 Zn2+, Co2+ efflux permease 1 Contig705gene38 Contig705gene8123 Contig374gene6900 Rme_3924 Contig71gene3925   gi|48770406|ref|ZP_00274749.1| 9E-167       436 6 2.A.4.1.2(1) 100 3E-22 2 chromosome
2.A.5 Zinc (Zn2+)-Iron (Fe2+) Permease ZIP COG0428: Predicted divalent heavy-metal cations transporter [Ralstonia Zn2+, Fe2+ B, A, E 1 1 Contig522gene5 Contig522gene1649 Contig356gene1473 Rme_1619 Contig64gene1620 gi|48768889|ref|ZP_00273237.1| 6E-115 291 6 2.A.5.4.1(1) 3
2.A.6 Resistance-Nodulation-Cell Division RND                           0                    
0
- HME (1) COG3696: Putative silver efflux pump [Ralstonia metallidurans CH34] Heavy metal ions; multiple drugs; oligosaccharides; organic solvents, fatty acids, phospholipids; cholesterol B, A, E Heavy metal efflux pump (Ni2+ and Co2+) 1 Contig709gene15 Contig709gene8597 Contig369gene4237 Rme_2397 Contig67gene2398 gi|48768971|ref|ZP_00273318.1| 0 1076 11 2.A.6.1.1(1) 1716 0 1 pMol30
COG3696: Putative silver efflux pump [Ralstonia metallidurans CH34] 1 Contig712gene9210 Contig368gene3999 gi|48768490|ref|ZP_00272839.1| 0 1076 12 2.A.6.1.1(1) 1859 0 1 pMol28
0
COG3696: Putative silver efflux pump [Ralstonia metallidurans CH34] Heavy metal efflux pump (Co2+; Zn2+; Cd2+) 1 Contig465gene1 Contig465gene848 Contig331gene151 Rme_0500 Contig56gene501 gi|48767394|ref|ZP_00271751.1| 0 607 8 2.A.6.1.2(1) 889 0 1 chromosome
1 Contig593gene3049 .Contig371gene5463 N-term.fragm. 824 6 2.A.6.1.2(1) 408 1E-115 1
COG3696: Putative silver efflux pump [Ralstonia metallidurans CH34] 1 Contig593gene13 Contig593gene3050 .Contig371gene5463 Rme_3115 Contig69gene3116 gi|48769405|ref|ZP_00273751.1| 1,5E-61 fragment 133 0 2.A.6.1.X 73 6E-15 3
COG3696: Putative silver efflux pump [Ralstonia metallidurans CH34] 1 Contig593gene14 Contig593gene3051 Contig371gene5464 Rme_3116 Contig69gene3117 gi|48769406|ref|ZP_00273752.1| 3,6E-74 C-term.fragm 184 5 2.A.6.1.X 121 2E-29 1
COG3696: Putative silver efflux pump [Ralstonia metallidurans CH34] 1 Contig647gene12 Contig647gene4590 Contig373gene6557 Rme_3714 Contig70gene3715 gi|48770122|ref|ZP_00274466.1| 0 1039 12 2.A.6.1.2(1) 607 1E-174 1
COG3696: Putative silver efflux pump [Ralstonia metallidurans CH34] 1 Contig647gene18 Contig647gene4596 Contig373gene6563 Rme_3719 Contig70gene3720 gi|48770112|ref|ZP_00274456.1| 0 1045 12 2.A.6.1.2(1) 609 1E-175 1
1 Contig663gene5191 Contig375gene8617 N-term.fragm. 634 6 2.A.6.1.2(1) 926 0 1 pMol30
COG3696: Putative silver efflux pump [Ralstonia metallidurans CH34] 1 Contig663gene17 Contig663gene5192 Contig375gene8617 Rme_6250 Contig72gene6251 gi|48771987|ref|ZP_00276329.1| 0 C-term.fragm 559 6 2.A.6.1.2(1) 1002 0 1
COG0841: Cation/multidrug efflux pump [Ralstonia metallidurans CH34] 1 Contig664gene4 Contig664gene5224 Contig361gene2416 Rme_5789 Contig72gene5790 gi|48772730|ref|ZP_00277072.1| 0 1036 12 2.A.6.1.2(1) 209 9E-55 1 chromosome
COG3696: Putative silver efflux pump [Ralstonia metallidurans CH34] 1 Contig695gene63 Contig695gene7195 Contig375gene8282 Rme_6000 Contig72gene6001 gi|48772372|ref|ZP_00276714.1| 0 1023 11 2.A.6.1.2(1) 718 0 1
COG3696: Putative silver efflux pump [Ralstonia metallidurans CH34] 1 Contig696gene49 Contig696gene7261 Contig363gene2863 Rme_0859 Contig60gene860 gi|48767692|ref|ZP_00272046.1| 0 1009 7 2.A.6.1.2(1) 513 5E-163 1
1 Contig711gene8987 Contig375gene8486 691 6 2.A.6.1.2(1) 372 1E-104 1
1 Contig711gene8990 Contig375gene8119 365 5 2.A.6.1.2(1) 199 3E-52 1
0
COG3696: Putative silver efflux pump [Ralstonia metallidurans CH34] Silver ion (Ag+)-specific efflux pump 1 Contig619gene18 Contig619gene3646 Contig373gene6081 Rme_3315 Contig70gene3316 gi|48769848|ref|ZP_00274192.1| 0 1055 14 2.A.6.1.3(1) 1263 0 2 chromosome
0
COG0845: Membrane-fusion protein [Ralstonia metallidurans CH34] Cu+/Ag+ efflux pump, CusABCF (may pump ions from the periplasm to the external medium) 1 Contig532gene7 Contig532gene1821 Contig357gene1642 Rme_0562 Contig57gene563 gi|48767472|ref|ZP_00271828.1| 0 384 0 2.A.6.1.4(4) 77 2E-15 3 chromosome
COG0845: Membrane-fusion protein [Ralstonia metallidurans CH34] 1 Contig709gene8738 Contig369gene4482 gi|48768980|ref|ZP_00273327.1| 0 N-term.fragm. 521 1 2.A.6.1.4(4) 260 2E-70 2 pMol30
COG3696: Putative silver efflux pump [Ralstonia metallidurans CH34] 19 1 Contig709gene8739 Contig369gene4483 gi|48768979|ref|ZP_00273326.1| 0 C-term.fragm 1056 14 2.A.6.1.4(1) 1293 0 2
- HAE1 (2) COG0841: Cation/multidrug efflux pump [Ralstonia metallidurans CH34] Hydrophobe/Amphiphile Substrates B (gram neg.)   Multidrug/dye/detergent resistance pump (substrates include: chloramphenicol, tetracycline, erythromycin, nalidixic acid, fusidic acid, fluoroquinolones, lipophilic -lactams, norfloxacin, doxorubicin, novobiocin, rifampin, trimethoprim, acriflavin, crystal violet, ethidium, disinfectants rhodamine-6G, TPP, benzalkonium, SDS, Triton X-100, deoxycholate/bile salt/organic solvent (alkanes)/phospholipids) (Lateral entry of substrate from the lipid bilayer into AcrB and its homologues has been proposed.) (Yu et al., 2003) 7 Contig699gene64 Contig699gene7567 Contig375gene7765 Rme_5052 Contig72gene5053   gi|48771528|ref|ZP_00275870.1| 0       1050 12 2.A.6.2.2(1) 1131 0 2 chromosome
COG0841: Cation/multidrug efflux pump [Ralstonia metallidurans CH34] Multidrug efflux pump, AcrD (exports aminoglycosides (amikacin, gentamicin, neomycin, kanamycin and tobramycin) as well as anionic detergents (SDS and deoxycholate) 7 Contig680gene2 Contig680gene6017 Contig369gene4331 Rme_6047 Contig72gene6048 gi|48772271|ref|ZP_00276613.1| 0 1044 12 2.A.6.2.7(1) 832 0 2
COG0841: Cation/multidrug efflux pump [Ralstonia metallidurans CH34] Solvent efflux pump, TtgB (extrudes toluene, styrene, m-xylene, ethylbenzene and propylbenzene) 7 Contig425gene3 Contig425gene467 Contig358gene1808 Rme_5598 Contig72gene5599 gi|48772502|ref|ZP_00276844.1| 0 1063 12 2.A.6.2.9(1) 675 0 2
0
COG0841: Cation/multidrug efflux pump [Ralstonia metallidurans CH34] Multidrug/detergent resistance protein YegN (MdtB) (exports nalidixic acid, norfloxacin, enoxacin, kanamycin, benzalkonium, SDS and deoxycholate) 7 Contig458gene2 Contig458gene773 Contig375gene7572 Rme_0381 Contig54gene381 gi|48767259|ref|ZP_00271618.1| 0 component 1 713 10 2.A.6.2.12(1) 752 0 2 chromosome
COG0841: Cation/multidrug efflux pump [Ralstonia metallidurans CH34] 7 Contig458gene3 Contig458gene774 Contig375gene7573 Rme_0382 Contig54gene382 gi|48767260|ref|ZP_00271619.1| 0 component 2 1100 12 2.A.6.2.12(1) 759 0 2
7 Contig562gene2369 .Contig365gene3373 N-term.fragm. 263 0 2.A.6.2.12(1) 100 9E-23 2
7 Contig562gene2370 Contig365gene3373 C-term.fragm 882 11 2.A.6.2.12(1) 629 0 2
COG0841: Cation/multidrug efflux pump [Ralstonia metallidurans CH34] 7 Contig609gene18 Contig609gene3422 Contig353gene1179 Rme_5896 Contig72gene5897 gi|48772547|ref|ZP_00276889.1| 0 1065 12 2.A.6.2.12(1) 264 2E-71 2
  COG0841: Cation/multidrug efflux pump [Ralstonia metallidurans CH34]     9   7 Contig699gene56 Contig699gene7559 Contig375gene7759 Rme_5047 Contig72gene5048   gi|48771521|ref|ZP_00275863.1| 0       1069 12 2.A.6.2.12(1) 766 0 2
- SecDF(4) COG0342: Preprotein translocase subunit SecD [Ralstonia metallidurans CH34] are secretory accessory proteins B The secretory accessory proteins, SecDF 7 Contig682gene36 Contig682gene6160 Contig372gene5750 Rme_2802 Contig68gene2803 gi|48768648|ref|ZP_00272997.1| 0 N-term.fragm. 636 5 2.A.6.4.1(2) 436 1E-123 2
COG0341: Preprotein translocase subunit SecF [Ralstonia metallidurans CH34] 2 7 Contig682gene37 Contig682gene6161 Contig372gene5751 Rme_2803 Contig68gene2804 gi|48768649|ref|ZP_00272998.1| 2E-177 C-term.fragm 324 6 2.A.6.4.1(2) 231 4E-62 2
- HAE2 (5)   Hydrophobe/Amphiphile Substrates B (gram pos.) 1 The antibiotic actinorhodin transport-associated protein, ActII3 7   Contig523gene1665 Contig364gene3205                 908 9 2.A.6.5.1(1) 74 4E-14 3
  total 32 - ORF4 (8) COG4258: Predicted exporter [Ralstonia metallidurans CH34] Hydrophobe/Amphiphile Substrates B (gram pos.) 1 Xanthomonadin (brominated, aryl polyene pigment) exporter (to its outer membrane site), ORF4 7 Contig530gene12 Contig530gene1790 Contig364gene3146 Rme_4691 Contig71gene4692   gi|48770639|ref|ZP_00274982.1| 0       795 11 2.A.6.8.1(1) 128 1E-30 2
2.A.7 Drug/Metabolite Transporter DMT Multiple drugs and dyes (mostly cationic) B 0
0
- SMR (1) COG2076: Membrane transporters of cations and cationic drugs [Ralstonia drugs B, A Small multidrug efflux pump (substrates: cationic lipophilic drugs) 7 Contig601gene29 Contig601gene3255 Contig338gene297 Rme_0708 Contig59gene709 gi|48767562|ref|ZP_00271917.1| 3E-40 109 4 2.A.7.1.3(1) 72 5E-15 3 chromosome
COG0697: Permeases of the drug/metabolite transporter (DMT) superfamily 2 7 Contig599gene14 Contig599gene3185 Contig374gene7258 Rme_2539 Contig67gene2540 gi|48769188|ref|ZP_00273535.1| 5,5E-65 123 5 2.A.7.1.3(1) 43 5E-06 3
- BAT (2) COG0697: Permeases of the drug/metabolite transporter (DMT) superfamily unknown B, A   Hypothethical protein 17 Contig522gene17 Contig522gene1661 Contig356gene1583 Rme_1685 Contig64gene1686   gi|48768891|ref|ZP_00273239.1| 9E-156       362 11 2.A.7.2.1(1) 40 0,0003 3
        2   17   Contig697gene7323 Contig375gene9035                 143 5 2.A.7.2.1(1) 140 2E-35 2
- DME (3) COG0697: Permeases of the drug/metabolite transporter (DMT) superfamily drugs, metabolites B, A YdeD efflux pump for O-acetylserine, cysteine, asparagine and glutamine (T. Dassler, Ph.D. thesis, Univ. Munich, Germany) 5 Contig415gene3 Contig415gene384 Contig375gene9463 Rme_6614 Contig72gene6615 gi|48771366|ref|ZP_00275708.1| 6E-145 297 10 2.A.7.3.2(1) 228 4E-61 2
COG0697: Permeases of the drug/metabolite transporter (DMT) superfamily 5 Contig454gene9 Contig454gene726 Contig364gene3008 Rme_4014 Contig71gene4015 gi|48770623|ref|ZP_00274966.1| 6E-165 306 10 2.A.7.3.2(1) 67 1E-12 3
5 Contig519gene1605 Contig374gene7235 134 3 2.A.7.3.2(1) 37 0,0005 3
COG0697: Permeases of the drug/metabolite transporter (DMT) superfamily 5 Contig635gene11 Contig635gene4188 Contig352gene1130 Rme_1157 Contig62gene1158 gi|48767932|ref|ZP_00272284.1| 1E-155 301 10 2.A.7.3.2(1) 77 9E-16 3
COG0697: Permeases of the drug/metabolite transporter (DMT) superfamily 5 Contig665gene44 Contig665gene5325 Contig375gene7949 Rme_5178 Contig72gene5179 gi|48771760|ref|ZP_00276102.1| 5E-165 297 10 2.A.7.3.2(1) 49 3E-07 3
COG0697: Permeases of the drug/metabolite transporter (DMT) superfamily 5 Contig696gene72 Contig696gene7284 Contig363gene2886 Rme_0874 Contig60gene875 gi|48767655|ref|ZP_00272009.1| 6E-161 347 11 2.A.7.3.2(1) 56 3E-09 3
0
COG0697: Permeases of the drug/metabolite transporter (DMT) superfamily PecM Probable blue pigment (indigoidine) exporter 9 Contig470gene16 Contig470gene914 Contig375gene8660 Rme_5981 gi|48772397|ref|ZP_00276739.1| 2E-172 337 11 2.A.7.3.3(1) 62 4E-11 3 chromosome
9 Contig479gene1019 Contig370gene4864 713 10 2.A.7.3.3(1) 50 4E-07 3
0
COG0697: Permeases of the drug/metabolite transporter (DMT) superfamily YwfM 17 Contig579gene6 Contig579gene2692 Contig361gene2346 Rme_5703 Contig72gene5704 gi|48772684|ref|ZP_00277026.1| 2E-139 300 10 2.A.7.3.4(1) 51 7E-08 3 chromosome
COG0697: Permeases of the drug/metabolite transporter (DMT) superfamily 17 Contig475gene8 Contig475gene972 Contig375gene8332 Rme_1296 Contig62gene1297 gi|48767893|ref|ZP_00272245.1| 2E-120 345 10 2.A.7.3.4(1) 37 0,001 3 pMol30
0
COG0697: Permeases of the drug/metabolite transporter (DMT) superfamily RhtA (YbiF) Thronine/Homoserine Exporter (may export other amino acids including proline, serine, cysteine, histidine and several amino acid analogues, based on resistance phenotypes (Livshits et al., 2003)) 5 Contig636gene39 Contig636gene4250 Contig348gene822 Rme_0967 Contig61gene1055 gi|48768214|ref|ZP_00272565.1| 4E-166 319 10 2.A.7.3.6(1) 41 0,00008 3 chromosome
COG5006: Predicted permease, DMT superfamily [Ralstonia metallidurans CH34] 12 5 Contig655gene44 Contig655gene4923 Contig375gene7919 Rme_5151 Contig72gene5152 gi|48771724|ref|ZP_00276066.1| 3E-145 288 10 2.A.7.3.6(1) 263 9E-72 2
- RarD (7) COG2962: Predicted permeases [Ralstonia metallidurans CH34] chloramphenicol B (gram neg.)   The chloramphenicol-sensitive protein, RarD 7   Contig710gene8932 Contig375gene7722       gi|48771483|ref|ZP_00275825.1| 2E-144       342 10 2.A.7.7.1(1) 107 1E-24 2
total 18 COG0697: Permeases of the drug/metabolite transporter (DMT) superfamily 2 The paraquat (methyl viologen) exporter, YddG (also exports benzyl viologen) 7 Contig711gene9100 Contig375gene8931 gi|48772133|ref|ZP_00276475.1| 3E-170 311 10 2.A.7.17.1(1) 319 1E-88 2
2.A.9 Cytochrome Oxidase Biogenesis Oxa1 COG0706: Preprotein translocase subunit YidC [Ralstonia metallidurans CH34] Proteins B, E (mito; chloro) 1 60 kDa inner membrane protein, YidC 10 Contig536gene5 Contig536gene1883 Contig375gene9312 Rme_6500 Contig72gene6501   gi|48771552|ref|ZP_00275894.1| 0       555 4 2.A.9.3.1(1) 340 1E-94 2
2.A.10 2-Keto-3-Deoxygluconate Transporter KDGT COG0531: Amino acid transporters [Ralstonia metallidurans CH34] 2-Keto-3-deoxygluconate B 1 2-keto-3-deoxygluconate:H+ symporter 4 Contig585gene22 Contig585gene2836 Contig356gene1558 Rme_1670 Contig64gene1671 gi|48768921|ref|ZP_00273269.1| 2E-120 327 10 2.A.10.1.1(1) 215 3E-57 2
2.A.11 Citrate-Mg2+:H+ (CitM) Citrate-Ca2+:H+ (CitH) Symporter CitMHS COG2610: H+/gluconate symporter and related permeases [Ralstonia metallidurans Citrate B 1 [Citrate or D-isocitrate]M2+ (Mg2+ preferring):H+ symporter, CitM 6 Contig574gene1 Contig574gene2576 Contig375gene7824 Rme_5091 Contig72gene5092   gi|48771609|ref|ZP_00275951.1| 2E-132       317 7 2.A.11.1.1(1) Eval < 1e-02 Eval < 1e-02 3
2.A.12 ATP:ADP Antiporter AAA COG3202: ATP/ADP translocase [Ralstonia metallidurans CH34] ATP, ADP B, E (Pl) 1 Nucleoside triphosphate:H+ symporter 8 Contig543gene12 Contig543gene2018 Contig375gene7893 Rme_5132 Contig72gene5133   gi|48771698|ref|ZP_00276040.1| 0       453 10 2.A.12.3.1(1) 51 1E-07 3
2.A.14 Lactate Permease LctP COG1620: L-lactate permease [Ralstonia metallidurans CH34] Lactate B, A 1 Glycolate permease (substrates: L-lactate, D-lactate and glycolate) 4 Contig704gene77 Contig704gene8070 Contig372gene5556 Rme_2161 Contig66gene2162   gi|48768289|ref|ZP_00272639.1| 0       566 16 2.A.14.1.2(1) 648 0 2
2.A.19 Ca2+:Cation Antiporter CaCA COG0387: Ca2+/H+ antiporter [Ralstonia metallidurans CH34] Ca2+ B, A, E 1 Ca2+:H+ antiporter (also catalyzes Na+:H+ antiport, but weakly) 1 Contig560gene4 Contig560gene2317 Contig375gene7970 Rme_5191 Contig72gene5192   gi|48771786|ref|ZP_00276128.1| 5E-126       360 11 2.A.19.1.1(1) 128 6E-31 2
2.A.20 Inorganic Phosphate Transporter PiT COG0306: Phosphate/sulphate permeases [Ralstonia metallidurans CH34] Inorganic phosphate B, A, E 1 Low affinity Pi transporter 2 Contig653gene18 Contig653gene4794 Contig344gene557 Rme_5773 Contig72gene5774   gi|48772761|ref|ZP_00277103.1| 3E-178       336 9 2.A.20.2.4(1) 115 5E-27 2
2.A.21 Solute:Sodium Symporter SSS COG0591: Na+/proline symporter [Ralstonia metallidurans CH34] Sugars; amino acids; vitamins; nucleosides; inositols; iodide; urea B, A, E   The monocarboxylate uptake (H+ symport?) permease, MctP (transports lactate, pyruvate, propionate, butyrate, _-hydroxybutylate, L- and D-alanine, and possibly cysteine and histidine) 6 Contig497gene6 Contig497gene1254 Contig375gene7737 Rme_5033 Contig72gene5034   gi|48771497|ref|ZP_00275839.1| 0       461 13 2.A.21.4.1(1) 115 5E-27 2
0
COG4147: Predicted symporter [Ralstonia metallidurans CH34] Phenylacetate permease, Ppa 9 Contig475gene4 Contig475gene968 Contig375gene8758 Rme_1130 Contig62gene1131 gi|48767895|ref|ZP_00272247.1| 0 683 14 2.A.21.7.1(1) 118 1E-27 2 pMol30
COG4147: Predicted symporter [Ralstonia metallidurans CH34] 9 Contig707gene92 Contig707gene8422 Contig372gene5917 Rme_2295 Contig66gene2296 gi|48768399|ref|ZP_00272749.1| 0 553 14 2.A.21.7.1(1) 615 1E-177 2 chromosome
0
COG0591: Na+/proline symporter [Ralstonia metallidurans CH34] High affinity neuronal choline: Na+ symporter, CHT1 (chloride-dependent) 1 Contig675gene5 Contig675gene5755 Contig359gene1964 Rme_1236 Contig62gene1237 gi|48767999|ref|ZP_00272351.1| 0 478 13 2.A.21.8.1(1) 132 4E-32 2 chromosome
      COG2205: Osmosensitive K+ channel histidine kinase [Ralstonia metallidurans CH34]     5 The nitrogen sensor-receptor domain of the CbrA sensor kinase 2   Contig572gene2552 Contig374gene7322       gi|48770563|ref|ZP_00274906.1| 0       712 4 2.A.21.9.1(1) 93 6E-20 3
2.A.23 Dicarboxylate/Amino Acid:Cation (Na+ or H+) Symporter DAACS COG1301: Na+/H+-dicarboxylate symporters [Ralstonia metallidurans CH34] C4-dicarboxylates; acidic and neutral amino acids B, A, E Glutamate/aspartate:Na+ + H+ symporter 5 Contig598gene2 Contig598gene3155 Contig365gene3380 Rme_4292 Contig71gene4293 gi|48771208|ref|ZP_00275551.1| 0 435 9 2.A.23.1.2(1) 280 9E-77 2
COG1301: Na+/H+-dicarboxylate symporters [Ralstonia metallidurans CH34] 5 Contig680gene51 Contig680gene6066 Contig369gene4393 Rme_5460 Contig72gene5461 gi|48772272|ref|ZP_00276614.1| 0 430 8 2.A.23.1.2(1) 283 2E-77 2
0
COG1301: Na+/H+-dicarboxylate symporters [Ralstonia metallidurans CH34] C4-dicarboxylate transporter (substrates: fumarate, D- and L-malate, succinate, succinamide, orotate, iticonate, mesaconate) 6 Contig554gene13 Contig554gene2212 Contig375gene7654 Rme_4983 Contig72gene4984 gi|48771385|ref|ZP_00275727.1| 0 467 10 2.A.23.1.3(1) 410 1E-116 2 chromosome
COG1301: Na+/H+-dicarboxylate symporters [Ralstonia metallidurans CH34] 6 Contig694gene46 Contig694gene7070 Contig369gene4353 Rme_6065 Contig72gene6066 gi|48772239|ref|ZP_00276581.1| 0 452 8 2.A.23.1.3(1) 439 1E-124 2
6 0
COG1301: Na+/H+-dicarboxylate symporters [Ralstonia metallidurans CH34] 5 Contig705gene108 Contig705gene8193 Contig374gene7480 Rme_4860 Contig71gene4861 gi|48770376|ref|ZP_00274719.1| 0 429 10 2.A.23.1.3(1) 514 1E-147 2 chromosome
2.A.24 Citrate:Cation Symporter CCS COG3493: Na+/citrate symporter [Ralstonia metallidurans CH34] Mono-, di-, and tricarboxylates B 1 Citrate:acetate antiporter, CitW 6 Contig508gene7 Contig508gene1428 Contig373gene6794 Rme_3865 Contig70gene3866   gi|48769815|ref|ZP_00274159.1| 5E-141       276 8 2.A.24.2.5(1) 303 7E-84 2
2.A.36 Monovalent Cation:Proton Antiporter-1 CPA1 COG0025: NhaP-type Na+/H+ and K+/H+ antiporters [Ralstonia metallidurans CH34] Na+/H+; Na+ or K+/H+ B, A, E 1 Putative Na+:H+ antiporter, Nhe2 1 Contig408gene4 Contig408gene345 Contig373gene6805 Rme_3872 Contig70gene3873   gi|48769804|ref|ZP_00274148.1| 3E-167       435 12 2.A.36.6.1(1) 72 5E-14 3
2.A.37 Monovalent Cation:Proton Antiporter-2 CPA2 COG0475: Kef-type K+ transport systems, membrane components [Ralstonia Na+/H+ or K+/H+ B, A, E   Glutathione-regulated K+ efflux protein C, KefC 1 Contig656gene15 Contig656gene4941 Contig358gene1749 Rme_5565 Contig72gene5566   gi|48772442|ref|ZP_00276784.1| 1E-151       404 12 2.A.37.1.1(2) 224 9E-60 2
COG2249: Putative NADPH-quinone reductase (modulator of drug activity B) 1 Contig708gene99 Contig708gene8556 Contig375gene9498 Rme_6638 Contig72gene6639 gi|48771318|ref|ZP_00275660.1| 2,2E-94 N-term.fragm. 219 0 2.A.37.1.1(2) 149 9E-38 2
COG0475: Kef-type K+ transport systems, membrane components [Ralstonia 1 Contig708gene100 Contig708gene8557 Contig375gene9499 Rme_6639 Contig72gene6640 gi|48771317|ref|ZP_00275659.1| 0 C-term.fragm 604 13 2.A.37.1.1(2) 426 1E-120 2
0
COG0475: Kef-type K+ transport systems, membrane components [Ralstonia Glutathione-regulated K+ efflux protein B, KefB 1 Contig669gene11 Contig669gene5489 Contig374gene7542 Rme_4905 Contig71gene4906 gi|48770297|ref|ZP_00274640.1| 0 674 13 2.A.37.1.2(2) 272 5E-74 2 chromosome
COG4651: Kef-type K+ transport system, predicted NAD-binding component [Ralstonia 1 Contig691gene142 Contig691gene6868 Contig375gene8748 Rme_1124 Contig62gene1125 gi|48767880|ref|ZP_00272232.1| 0 408 13 2.A.37.1.2(2) 157 1E-39 2 pMol30
6 1 Contig710gene8824 Contig375gene9414 406 12 2.A.37.1.2(2) 46 4E-06 3 chromosome
2.A.40 Nucleobase:Cation Symporter-2 NCS2 COG2233: Xanthine/uracil permeases [Ralstonia metallidurans CH34] Nucleobases; urate B, A, E   Uracil permease 8 Contig529gene15 Contig529gene1773 Contig370gene4820 Rme_4426 Contig71gene4427   gi|48771073|ref|ZP_00275416.1| 0       482 13 2.A.40.1.1(1) 203 2E-53 2
COG2252: Permeases [Ralstonia metallidurans CH34] 8 Contig707gene14 Contig707gene8344 Contig372gene5621 Rme_2203 Contig66gene2204 gi|48768369|ref|ZP_00272719.1| 0 453 13 2.A.40.1.1(1) 40 0,0003 3
0
      COG2233: Xanthine/uracil permeases [Ralstonia metallidurans CH34]     3 Xanthine permease 8 Contig706gene29 Contig706gene8242 Contig371gene5375 Rme_3044 Contig69gene3045   gi|48769304|ref|ZP_00273650.1| 0       445 14 2.A.40.3.1(1) 233 2E-62 2 chromosome
2.A.45 Arsenite-Antimonite ArsB COG1055: Na+/H+ antiporter NhaD and related arsenite permeases [Ralstonia Arsenite, antimonite B, A, E 1 Arsenical resistance efflux pump (pmf-dependent) 1 Contig648gene15 Contig648gene4612 Contig375gene8078 Rme_5264 Contig72gene5265 gi|48771931|ref|ZP_00276273.1| 3E-177 419 12 2.A.45.1.1(1) 76 3E-15 3
2.A.46 Benzoate:H+ Symporter BenE COG3135: Uncharacterized protein involved in benzoate metabolism [Ralstonia Benzoate B 1 Benzoate permease 9 Contig601gene27 Contig601gene3253 Contig338gene295 Rme_0707 Contig59gene708   gi|48767560|ref|ZP_00271915.1| 9E-169       395 12 2.A.46.1.1(1) 217 8E-58 2
2.A.47 Divalent Anion:Na+ Symporter DASS COG0471: Di- and tricarboxylate transporters [Ralstonia metallidurans CH34] Dicarboxylates; phosphate; sulfate B, A, E 2-oxoglutarate:malate antiporter (SodiTl) 6 Contig680gene6038 Contig369gene4367 gi|48770715|ref|ZP_00275058.1| 2E-112 200 6 2.A.47.3.1(1) 176 8E-46 2
6 Contig694gene7084 Contig369gene4366 551 11 2.A.47.3.1(1) 341 6E-95 2
0
COG0471: Di- and tricarboxylate transporters [Ralstonia metallidurans CH34] Probable tartrate:succinate antiporter 6 Contig674gene32 Contig674gene5746 Contig365gene3403 Rme_4311 Contig71gene4312 gi|48771238|ref|ZP_00275581.1| 0 507 15 2.A.47.3.3(1) 119 5E-28 2 chromosome
COG0471: Di- and tricarboxylate transporters [Ralstonia metallidurans CH34] 4 6 Contig698gene50 Contig698gene7430 Contig373gene6264 Rme_3453 Contig70gene3454 gi|48770060|ref|ZP_00274404.1| 0 530 15 2.A.47.3.3(1) 52 8E-08 3
2.A.49 Ammonium Transporter Amt   Ammonium B, A, E   Ammonium or ammonia transporter and regulatory sensor, AmtB (Blauwkamp and Ninfa, 2003) 1   Contig634gene4158 .Contig375gene7868             N-term.fragm.   335 8 2.A.49.X 133 1E-32 2
COG0004: Ammonia permease [Ralstonia metallidurans CH34] 1 Contig634gene26 Contig634gene4159 .Contig375gene7868 Rme_5114 Contig72gene5115 gi|48771667|ref|ZP_00276009.1| 0 C-term.fragm 154 3 2.A.49.X 55 2E-09 3
            3   1   Contig705gene8205 Contig374gene7490                 504 13 2.A.49.1.1(1) 418 1E-118 2
2.A.51 Chromate Ion Transporter CHR COG2059: Chromate transport protein ChrA [Ralstonia metallidurans CH34] Chromate; sulfate (uptake or efflux) B, A Chromate-resistance efflux pump 1 Contig393gene2 Contig393gene256 Contig355gene1410 Rme_0734 Contig59gene735 gi|48767537|ref|ZP_00271892.1| 2,8E-74 193 5 2.A.51.1.1(1) 59 2E-10 3
COG2059: Chromate transport protein ChrA [Ralstonia metallidurans CH34] 1 Contig652gene21 Contig652gene4765 Contig371gene5134 Rme_3187 Contig69gene3188 gi|48769433|ref|ZP_00273779.1| 6E-168 390 12 2.A.51.1.1(1) 516 1E-148 1
1 Contig712gene9417 Contig368gene4196 401 12 2.A.51.1.(0) 605 1E-174 1 pMol28
0
4 Chromate-sensitivity anion uptake permease 1 Contig665gene5305 Contig375gene7933 411 11 2.A.51.1.2(1) 86 5E-18 3 chromosome
2.A.52 Ni2+-Co2+ Transporter NiCoT COG3376: High-affinity nickel permease [Ralstonia metallidurans CH34] Ni2+, Co2+ B 1 Co2+ transporter (also transports Ni2+ with low affinity) 1 Contig455gene9 Contig455gene745 Contig334gene209 Rme_6658 Contig72gene6659   gi|48771281|ref|ZP_00275623.1| 4E-121       278 7 2.A.52.1.2(1) 57 1E-09 3
2.A.53 Sulfate Permease SulP COG0659: Sulfate permease and related transporters (MFS superfamily) [Ralstonia Sulfate B, A, E Low-affinity sulfate:H+ symporter, Sut3 2 Contig461gene4 Contig461gene802 Contig325gene78 Rme_0215 Contig48gene215 gi|48767117|ref|ZP_00271480.1| 0 603 11 2.A.53.1.4(1) 168 9E-43 2
COG0659: Sulfate permease and related transporters (MFS superfamily) [Ralstonia Sulfate permease 2 Contig638gene14 Contig638gene4307 Contig375gene8514 Rme_2619 Contig67gene2620 gi|48769076|ref|ZP_00273423.1| 0 492 13 2.A.53.3.1(1) 689 0 2
0
COG0659: Sulfate permease and related transporters (MFS superfamily) [Ralstonia Sulfate transporter 2 Contig552gene9 Contig552gene2176 Contig365gene3367 Rme_4285 Contig71gene4286 gi|48771192|ref|ZP_00275535.1| 0 599 11 2.A.53.4.1(1) 169 4E-43 2 chromosome
COG0659: Sulfate permease and related transporters (MFS superfamily) [Ralstonia 2 Contig686gene48 Contig686gene6391 Contig375gene8575 Rme_2463 Contig67gene2464 gi|48769041|ref|ZP_00273388.1| 0 578 11 2.A.53.4.1(1) 160 2E-40 2
COG0659: Sulfate permease and related transporters (MFS superfamily) [Ralstonia 5 2 Contig706gene24 Contig706gene8237 Contig371gene5371 Rme_3041 Contig69gene3042 gi|48769299|ref|ZP_00273645.1| 0 586 13 2.A.53.4.1(1) 246 2E-66 2
2.A.56 Tripartite ATP-independent Periplasmic Transporter TRAP-T   C4-dicarboxylates; acidic amino acids; sugars? ~ B, A   Tripartite dicarboxylate:H+ symporter (substrates include: fumarate, D- and L-malate, succinate, succinamide, orotate, iticonate and mesaconate) 6   Contig419gene423 Contig369gene4416               Ms 150 4 2.A.56.1.1(3) 80 7E-17 3
COG1638: TRAP-type C4-dicarboxylate transport system, periplasmic component 6 Contig426gene3 Contig426gene471 Contig361gene2330 Rme_5691 Contig72gene5692 gi|48772667|ref|ZP_00277009.1| 7E-175 R 327 1 2.A.56.1.1(3) 60 2E-10 3
COG1593: TRAP-type C4-dicarboxylate transport system, large permease component 6 Contig426gene5 Contig426gene473 Contig361gene2332 Rme_5693 Contig72gene5694 gi|48772669|ref|ZP_00277011.1| 0 ML 436 11 2.A.56.1.1(0) 167 1E-42 2
COG1593: TRAP-type C4-dicarboxylate transport system, large permease component 6 Contig431gene5 Contig431gene518 Contig369gene4416 Rme_5480 Contig72gene5481 gi|48772299|ref|ZP_00276641.1| 7E-113 component 1 L 230 7 2.A.56.1.1(3) 114 6E-27 2
COG1638: TRAP-type C4-dicarboxylate transport system, periplasmic component 6 Contig431gene6 Contig431gene519 Contig369gene4417 Rme_5481 Contig72gene5482 gi|48772300|ref|ZP_00276642.1| 0 component 2 R 343 1 2.A.56.1.1(3) 152 4E-38 2
0
COG4665: TRAP-type mannitol/chloroaromatic compound transport system, small 6 Contig688gene37 Contig688gene6507 Contig366gene3497 Rme_1756 Contig64gene1757 gi|48768774|ref|ZP_00273122.1| 4,3E-88 component 1 Ms 189 4 2.A.56.1.2(0) 136 9E-34 2 chromosome
      COG4664: TRAP-type mannitol/chloroaromatic compound transport system, large     7   6 Contig688gene38 Contig688gene6508 Contig366gene3498 Rme_1757 Contig64gene1758   gi|48768773|ref|ZP_00273121.1| 0   component 2 ML 574 13 2.A.56.1.2(0) 221 9E-59 2
2.A.58 Phosphate:Na+ Symporter PNaS COG1283: Na+/phosphate symporter [Ralstonia metallidurans CH34] Inorganic phosphate B, E Hypothetical protein, YjbB 2 Contig650gene15 Contig650gene4679 Contig353gene1224 Rme_5642 Contig72gene5643 gi|48772572|ref|ZP_00276914.1| 0 632 9 2.A.58.2.1(1) 107 3E-24 2
COG1283: Na+/phosphate symporter [Ralstonia metallidurans CH34] 2 2 Contig669gene14 Contig669gene5492 Contig374gene7545 Rme_4907 Contig71gene4908 gi|48770293|ref|ZP_00274636.1| 0 558 9 2.A.58.2.1(1) 474 1E-135 2
2.A.59 Arsenical Resistance-3 ACR3 COG0798: Arsenite efflux pump ACR3 and related permeases [Ralstonia metallidurans Arsenite B, A, E 1 ACR3 arsenite transporter 1 Contig596gene6 Contig596gene3110 Contig359gene2078 Rme_1205 Contig62gene1206   gi|48768044|ref|ZP_00272396.1| 1E-170       354 10 2.A.59.1.1(1) 77 1E-15 3
2.A.64 Twin Arginine Targeting Tat COG1826: Sec-independent protein secretion pathway components [Ralstonia Redox proteins B, A, E TatABCE translocase 10 Contig693gene48 Contig693gene6989 Contig367gene3817 Rme_1455 Contig63gene1456 gi|48767769|ref|ZP_00272122.1| 1,2E-40 component 1 77 1 2.A.64.1.1(4) 62 4E-12 3
COG1826: Sec-independent protein secretion pathway components [Ralstonia 10 Contig693gene49 Contig693gene6990 Contig367gene3818 Rme_1456 Contig63gene1457 gi|48767768|ref|ZP_00272121.1| 1,5E-77 component 2 168 1 2.A.64.1.1(4) 40 0,00005 3
COG0805: Sec-independent protein secretion pathway component TatC [Ralstonia 10 Contig693gene50 Contig693gene6991 Contig367gene3819 Rme_1457 Contig63gene1458 gi|48767767|ref|ZP_00272120.1| 9E-130 component 3 260 5 2.A.64.1.1(4) 222 2E-59 2
COG3203: Outer membrane protein (porin) [Ralstonia metallidurans CH34] 4 10 Contig693gene51 Contig693gene6992 Contig367gene3820 Rme_1458 Contig63gene1459 gi|48767766|ref|ZP_00272119.1| 0 component 4 401 1 2.A.64.1.1(4) 125 3E-30 2
2.A.66 Multidrug/Oligosaccharidyl-lipid/Polysaccharide MOP   Drugs ,lipid-linked oligosaccharide precursors B, A, E                     0                    
0
- MATE (1) COG0534: Na+-driven multidrug efflux pump [Ralstonia metallidurans CH34] drugs B, A, E Drug:Na+ antiporter (norfloxacin, ethidium, kanamycin, ciprofloxin, streptomycin efflux pump), NorM 7 Contig353gene1 Contig353gene61 Contig362gene2523 Rme_1839 Contig65gene1840 gi|48769616|ref|ZP_00273961.1| 0 449 12 2.A.66.1.1(1) 190 2E-49 2 chromosome
COG0534: Na+-driven multidrug efflux pump [Ralstonia metallidurans CH34] 7 Contig693gene16 Contig693gene6957 Contig367gene3916 Rme_1340 Contig63gene1341 gi|48767750|ref|ZP_00272103.1| 0 455 12 2.A.66.1.1(1) 48 1E-06 3
0
COG0534: Na+-driven multidrug efflux pump [Ralstonia metallidurans CH34] 3 Multidrug-resistance efflux pump, YdhE (exports chloramphenicol, norfloxacin, enoxacin, phosphomycin, doxorubicin, trimethoprim, ethidium, deoxycholate, etc.) 7 Contig667gene42 Contig667gene5416 Contig375gene8978 Rme_6272 Contig72gene6273 gi|48771960|ref|ZP_00276302.1| 0 492 12 2.A.66.1.3(1) 83 3E-17 3 chromosome
- PST (2) COG0600: ABC-type nitrate/sulfonate/bicarbonate transport system, permease polysacharides B, A 1 Probable acetan exporter 11 Contig688gene6537 Contig366gene3637 gi|48770692|ref|ZP_00275035.1| 0,151 419 12 2.A.66.2.4(1) 124 1E-29 2
- MVF (4) unknown B The mouse virulence factor, MviN 17 Contig558gene2278 Contig372gene5715 N-term.fragm. 184 4 2.A.66.4.1(1) 137 4E-34 2
  total 6   COG0728: Uncharacterized membrane protein, putative virulence factor [Ralstonia     2   17 Contig558gene6 Contig558gene2279 Contig372gene5715 Rme_2773 Contig68gene2774   gi|48768605|ref|ZP_00272954.1| 0   C-term.fragm   358 10 2.A.66.4.1(1) 296 1E-81 2
2.A.67 Oligopeptide Transporter OPT COG1297: Predicted membrane protein [Ralstonia metallidurans CH34] Peptides B, A, E Early sporulation protein, EspB (temporal control protein) 10 Contig707gene34 Contig707gene8364 Contig372gene5640 Rme_2215 Contig66gene2216 gi|48768387|ref|ZP_00272737.1| 0 668 17 2.A.67.3.1(1) 80 4E-16 3
COG1297: Predicted membrane protein [Ralstonia metallidurans CH34] 2 Orf HI0561/560 10 Contig501gene13 Contig501gene1329 Contig363gene2777 Rme_0799 Contig60gene800 gi|48767595|ref|ZP_00271949.1| 0 676 18 2.A.67.4.1(1) 555 1E-159 2
2.A.69 Auxin Efflux Carrier AEC COG0679: Predicted permeases [Ralstonia metallidurans CH34] Auxin (efflux) B, A, E   Auxin efflux carrier, PIN1 6 Contig676gene10 Contig676gene5819 Contig356gene1506 Rme_1643 Contig64gene1644   gi|48768936|ref|ZP_00273284.1| 2E-134       293 10 2.A.69.1.1(1) 45 4E-06 3
      COG0679: Predicted permeases [Ralstonia metallidurans CH34]     2 Putative malonate transporter, MdcF 6 Contig559gene11 Contig559gene2306 Contig375gene9534 Rme_0415 Contig54gene415   gi|48767249|ref|ZP_00271608.1| 5E-150       268 9 2.A.69.2.1(1) 49 2E-07 3
2.A.72 K+ Uptake Permease KUP COG3158: K+ transporter [Ralstonia metallidurans CH34] K+ (uptake) B, E (Y, Pl) 1 K+ uptake permease 1 Contig668gene2 Contig668gene5424 Contig349gene850 Rme_1946 Contig65gene1947 gi|48769767|ref|ZP_00274112.1| 0 656 11 2.A.72.1.1(1) 580 1E-167 2
2.A.75 L-Lysine Exporter LysE COG1279: Lysine efflux permease [Ralstonia metallidurans CH34] Basic amino acids B 1 L-lysine exporter (LysE) 5 Contig652gene24 Contig652gene4768 Contig371gene5136 Rme_3189 Contig69gene3190   gi|48769430|ref|ZP_00273776.1| 6E-105       216 6 2.A.75.1.1(1) 97 5E-22 2
2.A.76 Resistance to Homoserine/Threonine RhtB COG1280: Putative threonine efflux protein [Ralstonia metallidurans CH34] Neutral amino acids and their derivatives B Homoserine/homoserine lactone/_-hydroxynorvaline efflux permease (probable substrate:H+ antiporter), RhtB (YigK) 5 Contig448gene11 Contig448gene674 Contig355gene1462 Rme_0774 Contig59gene775 gi|48767478|ref|ZP_00271833.1| 2,4E-81 206 5 2.A.76.1.1(1) 89 1E-19 3
COG1280: Putative threonine efflux protein [Ralstonia metallidurans CH34] 5 Contig484gene7 Contig484gene1089 Contig362gene2710 Rme_2014 Contig65gene2015 gi|48769661|ref|ZP_00274006.1| 2E-114 223 6 2.A.76.1.1(1) 85 3E-18 3
5 Contig512gene1485 Contig355gene1382 209 6 2.A.76.1.1(1) 42 0,00003 3
COG1280: Putative threonine efflux protein [Ralstonia metallidurans CH34] 5 Contig564gene2397 Contig363gene2791 gi|48767613|ref|ZP_00271967.1| 4E-106 212 6 2.A.76.1.1(1) 60 1E-10 3
COG1280: Putative threonine efflux protein [Ralstonia metallidurans CH34] 5 Contig640gene26 Contig640gene4372 Contig371gene5511 Rme_3152 Contig69gene3153 gi|48769478|ref|ZP_00273824.1| 7,5E-91 208 6 2.A.76.1.1(1) 78 3E-16 3
COG1280: Putative threonine efflux protein [Ralstonia metallidurans CH34] 5 Contig705gene115 Contig705gene8200 Contig374gene7486 Rme_4865 Contig71gene4866 gi|48770368|ref|ZP_00274711.1| 1E-107 214 6 2.A.76.1.1(1) 130 6E-32 2
COG1280: Putative threonine efflux protein [Ralstonia metallidurans CH34] 5 Contig708gene51 Contig708gene8508 Contig375gene7623 Rme_4970 Contig72gene4971 gi|48771346|ref|ZP_00275688.1| 6,8E-87 233 6 2.A.76.1.1(1) 61 5E-11 3
COG1280: Putative threonine efflux protein [Ralstonia metallidurans CH34] 5 Contig711gene8950 Contig372gene5890 gi|48771296|ref|ZP_00275638.1| 2,7E-91 212 6 2.A.76.1.1(1) 52 2E-08 3
0
COG1280: Putative threonine efflux protein [Ralstonia metallidurans CH34] Threonine efflux permease (probable threonine:H+ antiporter), RhtC (YigJ) 5 Contig698gene58 Contig698gene7438 Contig373gene6271 Rme_3460 Contig70gene3461 gi|48770068|ref|ZP_00274412.1| 1E-102 205 5 2.A.76.1.2(1) 55 3E-09 3 chromosome
COG1280: Putative threonine efflux protein [Ralstonia metallidurans CH34] 5 Contig702gene2 Contig702gene7773 Contig373gene6137 Rme_3353 Contig70gene3354 gi|48769924|ref|ZP_00274268.1| 2,1E-95 203 6 2.A.76.1.2(1) 86 2E-18 3
COG1280: Putative threonine efflux protein [Ralstonia metallidurans CH34] 11 5 Contig704gene62 Contig704gene8055 Contig372gene5541 Rme_2150 Contig66gene2151 gi|48768270|ref|ZP_00272620.1| 1E-104 204 6 2.A.76.1.2(1) 91 6E-20 3
2.A.78 Branched Chain Amino Acid Exporter LIV-E COG1296: Predicted branched-chain amino acid permease (azaleucine resistance) Carboxylates, amino acids, amines (efflux) B, A ,E(Pr) 1 Branched chain amino acid efflux pump, AzlCD (extrudes azaleucine) 5 Contig635gene16 Contig635gene4193 Contig352gene1134 Rme_1159 Contig62gene1160   gi|48767939|ref|ZP_00272291.1| 3E-121       265 4 2.A.78.1.1(2)     3
2.A.80 Tricarboxylate Transporter TTT COG3181: Uncharacterized protein conserved in bacteria [Ralstonia metallidurans Tricarboxylate B, A The tricarboxylate transporter, TctABC 6 Contig396gene5 Contig396gene270 Contig373gene6710 Rme_3808 Contig70gene3809 gi|48769917|ref|ZP_00274261.1| 4E-179 R 326 1 2.A.80.1.1(3) 41 0,0001 3
COG3181: Uncharacterized protein conserved in bacteria [Ralstonia metallidurans 6 Contig403gene1 Contig403gene308 Contig364gene3003 Rme_4010 Contig71gene4011 gi|48770617|ref|ZP_00274960.1| 9E-167 R 292 1 2.A.80.1.1(3) 57 1E-09 3
COG3181: Uncharacterized protein conserved in bacteria [Ralstonia metallidurans 6 Contig423gene9 Contig423gene454 Contig364gene2995 Rme_4003 Contig71gene4004 gi|48770610|ref|ZP_00274953.1| 1E-172 R 320 1 2.A.80.1.1(3) 59 4E-10 3
COG3181: Uncharacterized protein conserved in bacteria [Ralstonia metallidurans 6 Contig456gene3 Contig456gene755 Contig358gene1831 Rme_5619 Contig72gene5620 gi|48772526|ref|ZP_00276868.1| 4E-157 R 337 0 2.A.80.1.1(3) 48 7E-07 3
6 Contig479gene1013 Contig370gene4730 R 360 1 2.A.80.1.1(3) 67 2E-12 3
COG3181: Uncharacterized protein conserved in bacteria [Ralstonia metallidurans 6 Contig481gene13 Contig481gene1043 Contig345gene580 Rme_0279 Contig52gene279 gi|48767158|ref|ZP_00271519.1| 8E-173 Ms 327 4 2.A.80.1.1(3) 54 2E-08 3
COG3181: Uncharacterized protein conserved in bacteria [Ralstonia metallidurans 6 Contig488gene6 Contig488gene1135 Contig360gene2191 Rme_2056 Contig65gene2057 gi|48769600|ref|ZP_00273945.1| 2E-172 R 326 1 2.A.80.1.1(3) 85 5E-18 3
COG3181: Uncharacterized protein conserved in bacteria [Ralstonia metallidurans 6 Contig502gene4 Contig502gene1336 Contig373gene6749 Rme_3835 Contig70gene3836 gi|48769869|ref|ZP_00274213.1| 4E-180 Ms 310 3 2.A.80.1.1(3) 65 5E-12 3
COG3181: Uncharacterized protein conserved in bacteria [Ralstonia metallidurans 6 Contig502gene10 Contig502gene1342 Contig373gene6096 Rme_3322 Contig70gene3323 gi|48769872|ref|ZP_00274216.1| 2E-160 Ms 328 3 2.A.80.1.1(3) 59 5E-10 3
COG3181: Uncharacterized protein conserved in bacteria [Ralstonia metallidurans 6 Contig504gene3 Contig504gene1364 Contig373gene6578 Rme_3726 Contig70gene3727 gi|48770086|ref|ZP_00274430.1| 0 R 330 0 2.A.80.1.1(3) 53 2E-08 3
COG3181: Uncharacterized protein conserved in bacteria [Ralstonia metallidurans 6 Contig510gene6 Contig510gene1460 Contig371gene5514 Rme_3155 Contig69gene3156 gi|48769484|ref|ZP_00273830.1| 0 Ms 328 4 2.A.80.1.1(3) 49 3E-07 3
COG3181: Uncharacterized protein conserved in bacteria [Ralstonia metallidurans 6 Contig510gene9 Contig510gene1463 Contig371gene5517 Rme_3158 Contig69gene3159 gi|48769487|ref|ZP_00273833.1| 1E-175 R 325 2 2.A.80.1.1(3) 49 5E-07 3
COG3181: Uncharacterized protein conserved in bacteria [Ralstonia metallidurans 6 Contig513gene4 Contig513gene1500 Contig373gene6354 Rme_3517 Contig70gene3518 gi|48770165|ref|ZP_00274509.1| 0 R 322 0 2.A.80.1.1(3) 45 7E-06 3
COG3181: Uncharacterized protein conserved in bacteria [Ralstonia metallidurans 6 Contig526gene11 Contig526gene1719 Contig370gene4900 Rme_4478 Contig71gene4479 gi|48770961|ref|ZP_00275304.1| 7E-169 Ms 323 4 2.A.80.1.1(3) 66 2E-12 3
COG3181: Uncharacterized protein conserved in bacteria [Ralstonia metallidurans 6 Contig555gene11 Contig555gene2233 Contig357gene1683 Rme_0567 Contig57gene568 gi|48767461|ref|ZP_00271817.1| 1E-162 Ms 334 4 2.A.80.1.1(3) 63 2E-11 3
COG3181: Uncharacterized protein conserved in bacteria [Ralstonia metallidurans 6 Contig560gene13 Contig560gene2326 Contig375gene9115 Rme_6367 Contig72gene6368 gi|48771788|ref|ZP_00276130.1| 2E-163 R 328 2 2.A.80.1.1(3) 55 7E-09 3
COG3181: Uncharacterized protein conserved in bacteria [Ralstonia metallidurans 6 Contig561gene17 Contig561gene2348 Contig358gene1825 Rme_5613 Contig72gene5614 gi|48772519|ref|ZP_00276861.1| 1E-174 R 327 1 2.A.80.1.1(3) 66 2E-12 3
COG3181: Uncharacterized protein conserved in bacteria [Ralstonia metallidurans 6 Contig570gene18 Contig570gene2515 Contig373gene6531 Rme_3696 Contig70gene3697 gi|48770150|ref|ZP_00274494.1| 0 R 321 0 2.A.80.1.1(3) 66 2E-12 3
COG3181: Uncharacterized protein conserved in bacteria [Ralstonia metallidurans 6 Contig589gene25 Contig589gene2946 Contig357gene1608 Rme_0532 Contig57gene533 gi|48767425|ref|ZP_00271781.1| 0 R 332 1 2.A.80.1.1(3) 59 5E-10 3
COG3181: Uncharacterized protein conserved in bacteria [Ralstonia metallidurans 6 Contig592gene9 Contig592gene3019 Contig372gene5872 Rme_2879 Contig68gene2880 gi|48768592|ref|ZP_00272941.1| 0 R 334 0 2.A.80.1.1(3) 57 1E-09 3
6 Contig595gene3104 Contig335gene234 R 313 0 2.A.80.1.1(3) 306 1E-84 2
COG3181: Uncharacterized protein conserved in bacteria [Ralstonia metallidurans 6 Contig607gene13 Contig607gene3371 Contig361gene2500 Rme_5852 Contig72gene5853 gi|48772636|ref|ZP_00276978.1| 6E-178 R 327 1 2.A.80.1.1(3) 65 5E-12 3
COG3181: Uncharacterized protein conserved in bacteria [Ralstonia metallidurans 6 Contig608gene20 Contig608gene3404 Contig341gene384 Rme_0266 Contig51gene266 gi|48766989|ref|ZP_00271358.1| 6E-131 R 336 1 2.A.80.1.1(3) 67 1E-12 3
COG3181: Uncharacterized protein conserved in bacteria [Ralstonia metallidurans 6 Contig609gene13 Contig609gene3417 Contig353gene1176 Rme_5893 Contig72gene5894 gi|48772550|ref|ZP_00276892.1| 9E-178 Ms 332 4 2.A.80.1.1(3) 40 0,0002 3
COG3181: Uncharacterized protein conserved in bacteria [Ralstonia metallidurans 6 Contig611gene18 Contig611gene3484 Contig374gene7144 Rme_2597 Contig67gene2598 gi|48769106|ref|ZP_00273453.1| 1E-169 R 366 0 2.A.80.1.1(3) 50 3E-07 3
COG3181: Uncharacterized protein conserved in bacteria [Ralstonia metallidurans 6 Contig611gene20 Contig611gene3486 Contig374gene7146 Rme_2599 Contig67gene2600 gi|48769104|ref|ZP_00273451.1| 3E-174 R 327 0 2.A.80.1.1(3) 48 7E-07 3
COG3181: Uncharacterized protein conserved in bacteria [Ralstonia metallidurans 6 Contig619gene10 Contig619gene3638 Contig373gene6763 Rme_3849 Contig70gene3850 gi|48769852|ref|ZP_00274196.1| 0 R 348 0 2.A.80.1.1(3) 65 6E-12 3
COG3181: Uncharacterized protein conserved in bacteria [Ralstonia metallidurans 6 Contig622gene33 Contig622gene3763 Contig345gene622 Rme_0304 Contig52gene304 gi|48767169|ref|ZP_00271530.1| 0 R 323 1 2.A.80.1.1(3) 56 3E-09 3
COG3181: Uncharacterized protein conserved in bacteria [Ralstonia metallidurans 6 Contig622gene39 Contig622gene3769 Contig345gene628 Rme_0310 Contig52gene310 gi|48767163|ref|ZP_00271524.1| 7E-178 R 363 1 2.A.80.1.1(3) 45 8E-06 3
COG3181: Uncharacterized protein conserved in bacteria [Ralstonia metallidurans 6 Contig624gene2 Contig624gene3808 Contig357gene1594 Rme_0527 Contig57gene528 gi|48767399|ref|ZP_00271755.1| 0 R 329 2 2.A.80.1.1(3) 62 3E-11 3
COG3181: Uncharacterized protein conserved in bacteria [Ralstonia metallidurans 6 Contig631gene3 Contig631gene4039 Contig366gene3580 Rme_1522 Contig64gene1523 gi|48768729|ref|ZP_00273077.1| 0 R 336 3 2.A.80.1.1(3) 43 0,00002 3
COG3181: Uncharacterized protein conserved in bacteria [Ralstonia metallidurans 6 Contig637gene13 Contig637gene4269 Contig354gene1306 Rme_5438 Contig72gene5439 gi|48772228|ref|ZP_00276570.1| 4E-172 R 353 2 2.A.80.1.1(3) 50 3E-07 3
COG3181: Uncharacterized protein conserved in bacteria [Ralstonia metallidurans 6 Contig640gene1 Contig640gene4347 Contig371gene5098 Rme_3162 Contig69gene3163 gi|48769480|ref|ZP_00273826.1| 2E-173 R 307 1 2.A.80.1.1(3) 55 7E-09 3
COG3181: Uncharacterized protein conserved in bacteria [Ralstonia metallidurans 6 Contig640gene17 Contig640gene4363 Contig371gene5502 Rme_3143 Contig69gene3144 gi|48769468|ref|ZP_00273814.1| 0 R 341 0 2.A.80.1.1(3) 58 7E-10 3
COG3333: Uncharacterized protein conserved in bacteria [Ralstonia metallidurans 6 Contig643gene16 Contig643gene4460 .Contig370gene4704 Rme_4168 Contig71gene4169 gi|48770979|ref|ZP_00275322.1| 0 component 1 ML 399 8 2.A.80.1.1(3) 266 2E-72 2
COG3181: Uncharacterized protein conserved in bacteria [Ralstonia metallidurans 6 Contig643gene17 Contig643gene4461 Contig370gene4705 Rme_4169 Contig71gene4170 gi|48770981|ref|ZP_00275324.1| 2E-178 component 2 R 325 0 2.A.80.1.1(3) 40 0,0002 3
COG3181: Uncharacterized protein conserved in bacteria [Ralstonia metallidurans 6 Contig648gene6 Contig648gene4603 Contig375gene8996 Rme_6281 Contig72gene6282 gi|48771939|ref|ZP_00276281.1| 1E-174 R 328 1 2.A.80.1.1(3) 47 2E-06 3
COG3181: Uncharacterized protein conserved in bacteria [Ralstonia metallidurans 6 Contig656gene19 Contig656gene4945 Contig358gene1912 Rme_5963 Contig72gene5964 gi|48772447|ref|ZP_00276789.1| 6E-179 R 333 0 2.A.80.1.1(3) 80 2E-16 3
COG3181: Uncharacterized protein conserved in bacteria [Ralstonia metallidurans 6 Contig665gene48 Contig665gene5329 Contig375gene7952 Rme_5181 Contig72gene5182 gi|48771764|ref|ZP_00276106.1| 2E-109 R 201 0 2.A.80.1.1(3) 53 1E-08 3
COG3181: Uncharacterized protein conserved in bacteria [Ralstonia metallidurans 6 Contig666gene44 Contig666gene5374 Contig370gene4597 Rme_4115 Contig71gene4116 gi|48770834|ref|ZP_00275177.1| 2E-169 R 333 0 2.A.80.1.1(3) 52 6E-08 3
COG3333: Uncharacterized protein conserved in bacteria [Ralstonia metallidurans 6 Contig667gene44 Contig667gene5418 Contig375gene8980 Rme_6274 Contig72gene6275 gi|48771958|ref|ZP_00276300.1| 0 ML 500 12 2.A.80.1.1(3) 2
COG3181: Uncharacterized protein conserved in bacteria [Ralstonia metallidurans 6 Contig670gene41 Contig670gene5558 Contig375gene8884 Rme_5353 Contig72gene5354 gi|48772074|ref|ZP_00276416.1| 1E-155 R 330 2 2.A.80.1.1(3) 43 0,00002 3
COG3181: Uncharacterized protein conserved in bacteria [Ralstonia metallidurans 6 Contig676gene4 Contig676gene5813 Contig356gene1500 Rme_1638 Contig64gene1639 gi|48768925|ref|ZP_00273273.1| 2E-166 R 337 2 2.A.80.1.1(3) 46 3E-06 3
COG3181: Uncharacterized protein conserved in bacteria [Ralstonia metallidurans 6 Contig681gene55 Contig681gene6121 Contig373gene6518 Rme_3686 Contig70gene3687 gi|48770177|ref|ZP_00274521.1| 1E-164 R 331 0 2.A.80.1.1(3) 50 2E-07 3
COG3181: Uncharacterized protein conserved in bacteria [Ralstonia metallidurans 6 Contig685gene26 Contig685gene6304 Contig354gene1258 Rme_5404 Contig72gene5405 gi|48772184|ref|ZP_00276526.1| 4E-155 R 345 2 2.A.80.1.1(3) 52 7E-08 3
COG3181: Uncharacterized protein conserved in bacteria [Ralstonia metallidurans 6 Contig686gene39 Contig686gene6382 Contig375gene8567 Rme_2458 Contig67gene2459 gi|48769035|ref|ZP_00273382.1| 0 R 348 0 2.A.80.1.1(3) 57 2E-09 3
COG3181: Uncharacterized protein conserved in bacteria [Ralstonia metallidurans 6 Contig686gene52 Contig686gene6395 Contig375gene8579 Rme_2465 Contig67gene2466 gi|48769046|ref|ZP_00273393.1| 0 R 353 0 2.A.80.1.1(3) 50 2E-07 3
COG3181: Uncharacterized protein conserved in bacteria [Ralstonia metallidurans 6 Contig689gene49 Contig689gene6608 Contig371gene5324 Rme_3002 Contig69gene3003 gi|48769250|ref|ZP_00273596.1| 1E-154 Ms 346 4 2.A.80.1.1(3) 44 0,00001 3
COG3181: Uncharacterized protein conserved in bacteria [Ralstonia metallidurans 6 Contig693gene66 Contig693gene7007 Contig367gene3835 Rme_1471 Contig63gene1472 gi|48767746|ref|ZP_00272099.1| 6E-159 R 323 1 2.A.80.1.1(3) 56 2E-09 3
COG3181: Uncharacterized protein conserved in bacteria [Ralstonia metallidurans 6 Contig694gene20 Contig694gene7044 Contig364gene3052 Rme_4040 Contig71gene4041 gi|48770683|ref|ZP_00275026.1| 6E-165 R 320 0 2.A.80.1.1(3) 55 5E-09 3
COG3181: Uncharacterized protein conserved in bacteria [Ralstonia metallidurans 6 Contig694gene87 Contig694gene7111 Contig364gene3101 Rme_4652 Contig71gene4653 gi|48770687|ref|ZP_00275030.1| 0 R 316 0 2.A.80.1.1(3) 56 3E-09 3
6 Contig698gene7406 Contig373gene6242 R 286 0 2.A.80.1.1(3) 38 0,0006 3
COG3181: Uncharacterized protein conserved in bacteria [Ralstonia metallidurans 6 Contig698gene53 Contig698gene7433 Contig373gene6267 Rme_3456 Contig70gene3457 gi|48770064|ref|ZP_00274408.1| 0 R 322 1 2.A.80.1.1(3) 61 1E-10 3
COG3181: Uncharacterized protein conserved in bacteria [Ralstonia metallidurans 6 Contig698gene70 Contig698gene7450 Contig373gene6280 Rme_3466 Contig70gene3467 gi|48770079|ref|ZP_00274423.1| 2E-174 R 330 1 2.A.80.1.1(3) 52 4E-08 3
COG3181: Uncharacterized protein conserved in bacteria [Ralstonia metallidurans 6 Contig698gene81 Contig698gene7461 Contig373gene6586 Rme_3732 Contig70gene3733 gi|48770069|ref|ZP_00274413.1| 0 Ms 331 4 2.A.80.1.1(3) 64 2E-11 3
COG3181: Uncharacterized protein conserved in bacteria [Ralstonia metallidurans 6 Contig699gene75 Contig699gene7578 Contig375gene7775 Rme_5059 Contig72gene5060 gi|48771543|ref|ZP_00275885.1| 2E-169 R 323 1 2.A.80.1.1(3) 41 0,0001 3
COG3181: Uncharacterized protein conserved in bacteria [Ralstonia metallidurans 6 Contig700gene3 Contig700gene7581 Contig371gene5154 Rme_3203 Contig69gene3204 gi|48769399|ref|ZP_00273745.1| 0 R 322 1 2.A.80.1.1(3) 54 1E-08 3
COG3181: Uncharacterized protein conserved in bacteria [Ralstonia metallidurans 6 Contig700gene25 Contig700gene7603 Contig371gene5178 Rme_3218 Contig69gene3219 gi|48769359|ref|ZP_00273705.1| 2E-152 R 326 2 2.A.80.1.1(3) 49 4E-07 3
COG3181: Uncharacterized protein conserved in bacteria [Ralstonia metallidurans 6 Contig700gene36 Contig700gene7614 Contig371gene5421 Rme_3081 Contig69gene3082 gi|48769351|ref|ZP_00273697.1| 7E-172 Ms 318 3 2.A.80.1.1(3) 66 2E-12 3
COG3181: Uncharacterized protein conserved in bacteria [Ralstonia metallidurans 6 Contig700gene42 Contig700gene7620 Contig371gene5426 Rme_3086 Contig69gene3087 gi|48769356|ref|ZP_00273702.1| 0 R 326 1 2.A.80.1.1(3) 68 6E-13 3
COG3181: Uncharacterized protein conserved in bacteria [Ralstonia metallidurans 6 Contig700gene45 Contig700gene7623 Contig371gene5429 Rme_3088 Contig69gene3089 gi|48769364|ref|ZP_00273710.1| 1E-169 R 320 1 2.A.80.1.1(3) 77 1E-15 3
COG3181: Uncharacterized protein conserved in bacteria [Ralstonia metallidurans 6 Contig700gene59 Contig700gene7637 Contig371gene5443 Rme_3098 Contig69gene3099 gi|48769380|ref|ZP_00273726.1| 2E-175 R 325 2 2.A.80.1.1(3) 58 8E-10 3
COG3181: Uncharacterized protein conserved in bacteria [Ralstonia metallidurans 6 Contig702gene28 Contig702gene7799 Contig373gene6160 Rme_3372 Contig70gene3373 gi|48769970|ref|ZP_00274314.1| 0 R 341 1 2.A.80.1.1(3) 57 1E-09 3
COG3181: Uncharacterized protein conserved in bacteria [Ralstonia metallidurans 6 Contig702gene94 Contig702gene7865 Contig373gene6671 Rme_3778 Contig70gene3779 gi|48769962|ref|ZP_00274306.1| 2E-171 R 346 0 2.A.80.1.1(3) 63 3E-11 3
COG3181: Uncharacterized protein conserved in bacteria [Ralstonia metallidurans 6 Contig702gene98 Contig702gene7869 Contig373gene6675 Rme_3781 Contig70gene3782 gi|48769956|ref|ZP_00274300.1| 7E-162 R 320 0 2.A.80.1.1(3) 69 4E-13 3
6 Contig704gene7998 Contig372gene6001 R 346 1 2.A.80.1.1(3) 43 0,00002 3
COG3181: Uncharacterized protein conserved in bacteria [Ralstonia metallidurans 6 Contig708gene74 Contig708gene8531 Contig375gene9477 Rme_6628 Contig72gene6629 gi|48771352|ref|ZP_00275694.1| 2E-174 Ms 330 3 2.A.80.1.1(3) 72 6E-14 3
6 Contig710gene8802 Contig375gene9392 R 339 1 2.A.80.1.1(3) 54 1E-08 3
COG3181: Uncharacterized protein conserved in bacteria [Ralstonia metallidurans 6 Contig710gene8938 Contig375gene7729 1 gi|48771488|ref|ZP_00275830.1| 6E-157 R 322 0 2.A.80.1.1(3) 105 3E-24 2
COG3333: Uncharacterized protein conserved in bacteria [Ralstonia metallidurans 6 Contig710gene8940 Contig375gene7731 1 gi|48771490|ref|ZP_00275832.1| 0 ML 504 13 2.A.80.1.1(3) 2
6 Contig711gene9036 Contig375gene8159 R 333 1 2.A.80.1.1(3) 99 3E-22 2
6 Contig711gene9038 Contig375gene8161 ML 551 12 2.A.80.1.1(3) 2
6 Contig711gene9049 Contig375gene8171 R 329 0 2.A.80.1.1(3) 39 0,0004 3
COG3333: Uncharacterized protein conserved in bacteria [Ralstonia metallidurans 74 6 Contig711gene9115 Contig375gene8944 1 gi|48772152|ref|ZP_00276494.1| 0 ML 513 11 2.A.80.1.1(3) 2
2.A.81 Aspartate:Alanine Exchanger AAE   aspartate, alanine B, A   The L-aspartate:L-alanine exchanger, AspT 5   Contig653gene4825 Contig344gene526               ML 489 8 2.A.81.1.1(1) 162 3E-41 2
COG2985: Predicted permease [Ralstonia metallidurans CH34] 2 5 Contig665gene42 Contig665gene5323 Contig375gene7947 Rme_5177 Contig72gene5178 gi|48771758|ref|ZP_00276100.1| 0 ML 567 11 2.A.81.1.1(1) 134 1E-32 2
                                0                    
2.C. Ion-gradient-driven energizers 0
2.C.1 TonB-ExbB-ExbD/TolA-TolQ-TolR Family of Auxiliary Proteins for Energization of Outer Membrane Receptor (OMR)-mediated Active Transport TonB   H+?; drives solute uptake across outer bacterial membranes B   The TonB energy-transducing system 1   Contig691gene6727 Contig375gene8338             component 1   243 3 2.C.1.1.1(3) 75 3E-15 3 pMol30
COG0848: Biopolymer transport protein [Ralstonia metallidurans CH34] 1 Contig691gene2 Contig691gene6728 Contig375gene8339 Rme_1303 Contig62gene1304 gi|48767886|ref|ZP_00272238.1| 7,2E-63 component 2 137 1 2.C.1.1.1(3) 53 6E-09 3
0
COG0811: Biopolymer transport proteins [Ralstonia metallidurans CH34] The TolA energy-transducing system 1 Contig625gene32 Contig625gene3866 Contig366gene3670 Rme_1586 Contig64gene1587 gi|48768840|ref|ZP_00273188.1| 3E-106 component 1 227 3 2.C.1.2.1(6) 181 2E-47 2 chromosome
COG0848: Biopolymer transport protein [Ralstonia metallidurans CH34] 1 Contig625gene33 Contig625gene3867 Contig366gene3671 Rme_1587 Contig64gene1588 gi|48768841|ref|ZP_00273189.1| 4,7E-70 component 2 145 1 2.C.1.2.1(6) 74 3E-15 3
5 1 Contig625gene3869 Contig366gene3673 component 3 382 1 2.C.1.2.1(6) 225 4E-60 3
                                0                    
3.A P-P bond hydrolysis-driven transporters 0
3.A.1 ATP-binding Cassette ABC   All sorts of inorganic and organic molecules of small, intermediate, and large sizes, from simple ions to macromolecules B, A, E                     0                  
0
- CUT1(1) COG3839: ABC-type sugar transport systems, ATPase components [Ralstonia suggars, metabolites B Glycerol-phosphate porter 4 Contig350gene1 Contig350gene46 Contig360gene2247 Rme_2103 Contig65gene2104 gi|48769528|ref|ZP_00273873.1| 4E-125 251 0 3.A.1.1.3(4) 211 4E-56 2 chromosome
0
COG1175: ABC-type sugar transport systems, permease components [Ralstonia 4 Contig442gene3 Contig442gene609 Contig360gene2245 Rme_2101 Contig65gene2102 gi|48769530|ref|ZP_00273875.1| 3E-154 component 1 (M) 293 6 3.A.1.1.3(4) 332 2E-92 2 chromosome
COG0395: ABC-type sugar transport system, permease component [Ralstonia 4 Contig442gene4 Contig442gene610 Contig360gene2246 Rme_2102 Contig65gene2103 gi|48769529|ref|ZP_00273874.1| 9E-143 component 2 (M) 282 6 3.A.1.1.3(4) 343 8E-96 2
4 Contig442gene611 Contig360gene2247 component 3 122 0 3.A.1.1.3(4) 154 1E-39 2
0
COG3839: ABC-type sugar transport systems, ATPase components [Ralstonia 4 Contig597gene11 Contig597gene3135 Contig362gene2677 Rme_1988 Contig65gene1989 gi|48769700|ref|ZP_00274045.1| 0 component 1 (C) 395 1 3.A.1.1.X 149 3E-37 2 chromosome
COG3839: ABC-type sugar transport systems, ATPase components [Ralstonia 4 Contig597gene12 Contig597gene3136 Contig362gene2678 Rme_1989 Contig65gene1990 gi|48769699|ref|ZP_00274044.1| 0 component 2 (C) 366 0 3.A.1.1.X 201 7E-53 2
COG1175: ABC-type sugar transport systems, permease components [Ralstonia 4 Contig597gene13 Contig597gene3137 Contig362gene2679 Rme_1990 Contig65gene1991 gi|48769698|ref|ZP_00274043.1| 2E-162 component 3 (M) 294 6 3.A.1.1.X 128 4E-31 2
COG0395: ABC-type sugar transport system, permease component [Ralstonia 4 Contig597gene14 Contig597gene3138 Contig362gene2680 Rme_1991 Contig65gene1992 gi|48769697|ref|ZP_00274042.1| 2E-161 component 4 (M) 276 6 3.A.1.1.X 130 1E-31 2
COG1653: ABC-type sugar transport system, periplasmic component [Ralstonia 4 Contig597gene16 Contig597gene3140 Contig362gene2682 Rme_1993 Contig65gene1994 gi|48769695|ref|ZP_00274040.1| 0 component 5 (R) 580 1 3.A.1.1.X 60 3E-10 3
COG3842: ABC-type spermidine/putrescine transport systems, ATPase components Palatinose (isomaltulose; 6-O-_-D-glucopyranosyl-D-fructose) uptake porter 4 Contig665gene38 Contig665gene5319 Contig375gene7943 Rme_5173 Contig72gene5174 gi|48771753|ref|ZP_00276095.1| 0 (C) 352 1 3.A.1.1.12(4) 234 4E-63 2
COG1118: ABC-type sulfate/molybdate transport systems, ATPase component Maltooligosaccharide porter (Maltose is not a substrate, but maltotriose is.) 4 Contig674gene28 Contig674gene5742 Contig365gene3399 Rme_4308 Contig71gene4309 gi|48771229|ref|ZP_00275572.1| 6E-129 (M) 279 0 3.A.1.1.16(4) 148 3E-37 2
COG1653: ABC-type sugar transport system, periplasmic component [Ralstonia 4 Contig683gene35 Contig683gene6218 Contig375gene9297 Rme_6491 Contig72gene6492 gi|48771563|ref|ZP_00275905.1| 0 component 1 (R) 464 0 3.A.1.1.X 39 0,0008 3
COG3839: ABC-type sugar transport systems, ATPase components [Ralstonia 4 Contig683gene36 Contig683gene6219 Contig375gene9298 Rme_6492 Contig72gene6493 gi|48771562|ref|ZP_00275904.1| 0 component 2 (C) 371 1 3.A.1.1.X 257 7E-70 2
COG1175: ABC-type sugar transport systems, permease components [Ralstonia 4 Contig683gene37 Contig683gene6220 Contig375gene9299 Rme_6493 Contig72gene6494 gi|48771561|ref|ZP_00275903.1| 6E-138 component 3 (M) 310 6 3.A.1.1.X 124 9E-30 2
COG0395: ABC-type sugar transport system, permease component [Ralstonia 15 4 Contig683gene38 Contig683gene6221 Contig375gene9300 Rme_6494 Contig72gene6495 gi|48771560|ref|ZP_00275902.1| 1E-157 component 4 (M) 295 6 3.A.1.1.X 133 1E-32 2
- CUT2 (2) COG4120: ABC-type uncharacterized transport system, permease component [Ralstonia suggars, metabolites B   Ribose porter 4 Contig409gene4 Contig409gene350 Contig349gene903 Rme_1926 Contig65gene1927   gi|48769788|ref|ZP_00274133.1| 3E-143     (M) 298 9 3.A.1.2.1(4) 57 1E-09 3
4 Contig479gene1007 Contig370gene4724 component 1 360 0 3.A.1.2.X 169 2E-43 2
COG4603: ABC-type uncharacterized transport system, permease component [Ralstonia 4 Contig479gene2 Contig479gene1008 Contig370gene4725 Rme_4186 Contig71gene4187 gi|48771008|ref|ZP_00275351.1| 0 component 2 (M) 364 10 3.A.1.2.X 44 0,00001 3
  COG1079: Uncharacterized ABC-type transport system, permease component [Ralstonia     4   4 Contig479gene3 Contig479gene1009 Contig370gene4726 Rme_4187 Contig71gene4188   gi|48771009|ref|ZP_00275352.1| 3E-159   component 3   306 9 3.A.1.X 37 0,002 3
- PAAT (3) COG0834: ABC-type amino acid transport/signal transduction systems, periplasmic polar amino acids B Glutamate/aspartate porter 5 Contig401gene4 Contig401gene301 Contig346gene661 Rme_4403 Contig71gene4404 gi|48771101|ref|ZP_00275444.1| 4E-129 225 0 3.A.1.3.4(4) 289 8E-80 2
COG0834: ABC-type amino acid transport/signal transduction systems, periplasmic 5 Contig539gene1 Contig539gene1932 .Contig369gene4394 Rme_5461 Contig72gene5462 gi|48772273|ref|ZP_00276615.1| 5E-33 64 0 3.A.1.3.4(4) 44 1E-06 3
COG0834: ABC-type amino acid transport/signal transduction systems, periplasmic 5 Contig576gene16 Contig576gene2629 Contig359gene1941 Rme_1220 Contig62gene1221 gi|48768032|ref|ZP_00272384.1| 4E-164 (R) 302 1 3.A.1.3.4(4) 304 4E-84 2
COG0834: ABC-type amino acid transport/signal transduction systems, periplasmic 5 Contig578gene5 Contig578gene2664 Contig346gene653 Rme_4397 Contig71gene4398 gi|48771111|ref|ZP_00275454.1| 9E-149 component 1 (R) 282 1 3.A.1.3.4(4) 98 5E-22 2
5 Contig578gene2665 Contig346gene654 component 2 (M) 231 5 3.A.1.3.4(4) 121 3E-29 2
COG0765: ABC-type amino acid transport system, permease component [Ralstonia 5 Contig578gene7 Contig578gene2666 Contig346gene655 Rme_4398 Contig71gene4399 gi|48771109|ref|ZP_00275452.1| 1E-110 component 3 (M) 447 6 3.A.1.3.4(4) 110 2E-25 2
COG1126: ABC-type polar amino acid transport system, ATPase component [Ralstonia 5 Contig578gene8 Contig578gene2667 Contig346gene656 Rme_4399 Contig71gene4400 gi|48771108|ref|ZP_00275451.1| 5E-141 component 4 (C) 249 0 3.A.1.3.4(4) 284 4E-78 2
COG0834: ABC-type amino acid transport/signal transduction systems, periplasmic 5 Contig599gene11 Contig599gene3182 Contig374gene7255 Rme_2536 Contig67gene2537 gi|48769183|ref|ZP_00273530.1| 4E-160 (R) 304 0 3.A.1.3.4(4) 210 9E-56 2
COG0834: ABC-type amino acid transport/signal transduction systems, periplasmic 5 Contig601gene26 Contig601gene3252 Contig338gene294 Rme_0706 Contig59gene707 gi|48767559|ref|ZP_00271914.1| 1E-152 (R) 310 1 3.A.1.3.4(4) 208 4E-55 2
COG0834: ABC-type amino acid transport/signal transduction systems, periplasmic 5 Contig675gene27 Contig675gene5777 Contig359gene1987 Rme_1257 Contig62gene1258 gi|48767974|ref|ZP_00272326.1| 1E-171 component 1 (R) 299 0 3.A.1.3.4(4) 361 1E-101 2
COG0765: ABC-type amino acid transport system, permease component [Ralstonia 5 Contig675gene28 Contig675gene5778 Contig359gene1988 Rme_1258 Contig62gene1259 gi|48767973|ref|ZP_00272325.1| 1E-137 component 2 (M) 242 5 3.A.1.3.4(4) 301 2E-83 2
COG0765: ABC-type amino acid transport system, permease component [Ralstonia 5 Contig675gene29 Contig675gene5779 Contig359gene1989 Rme_1259 Contig62gene1260 gi|48767972|ref|ZP_00272324.1| 1E-123 component 3 (M) 227 5 3.A.1.3.4(4) 291 3E-80 2
COG1126: ABC-type polar amino acid transport system, ATPase component [Ralstonia 5 Contig675gene30 Contig675gene5780 Contig359gene1990 Rme_1260 Contig62gene1261 gi|48767971|ref|ZP_00272323.1| 3E-138 component 4 (C) 244 0 3.A.1.3.4(4) 363 1E-102 2
0
COG1135: ABC-type metal ion transport system, ATPase component [Ralstonia 14 Cystine/diaminopimelate 5 Contig652gene4748 Contig371gene5478 gi|48769424|ref|ZP_00273770.1| 1E-142 (C) 274 0 3.A.1.3.10(3) 160 1E-40 2 chromosome
- HAAT (4) COG4177: ABC-type branched-chain amino acid transport system, permease component hydrophobic amino acids B   Leucine; leucine/isoleucine/valine porter 5 Contig399gene5 Contig399gene290 Contig350gene948 Rme_2892 Contig68gene2893   gi|48768567|ref|ZP_00272916.1| 1E-179   component 1 (M) 384 9 3.A.1.4.1(6) 189 3E-49 2
COG0411: ABC-type branched-chain amino acid transport systems, ATPase component 5 Contig399gene6 Contig399gene291 Contig350gene949 Rme_2893 Contig68gene2894 gi|48768566|ref|ZP_00272915.1| 2E-146 component 2 (C) 258 0 3.A.1.4.1(6) 239 9E-65 2
COG0410: ABC-type branched-chain amino acid transport systems, ATPase component 5 Contig399gene7 Contig399gene292 Contig350gene950 Rme_2894 Contig68gene2895 gi|48768565|ref|ZP_00272914.1| 8E-131 component 3 (C) 238 0 3.A.1.4.1(6) 213 1E-56 2
COG4177: ABC-type branched-chain amino acid transport system, permease component 5 Contig443gene7 Contig443gene621 Contig374gene7172 Rme_2485 Contig67gene2486 gi|48769081|ref|ZP_00273428.1| 3E-157 component 1 618 15 3.A.1.4.X 117 2E-27 2
COG0411: ABC-type branched-chain amino acid transport systems, ATPase component 5 Contig443gene8 Contig443gene622 Contig374gene7174 Rme_2486 Contig67gene2487 gi|48769082|ref|ZP_00273429.1| 4E-143 component 2 (C) 255 0 3.A.1.4.1(6) 152 2E-38 2
COG4177: ABC-type branched-chain amino acid transport system, permease component 5 Contig446gene6 Contig446gene643 Contig361gene2483 Rme_5838 Contig72gene5839 gi|48772654|ref|ZP_00276996.1| 8E-166 component 3 362 9 3.A.1.4.1(6) 73 2E-14 3
COG0411: ABC-type branched-chain amino acid transport systems, ATPase component 5 Contig446gene7 Contig446gene644 Contig361gene2484 Rme_5839 Contig72gene5840 gi|48772653|ref|ZP_00276995.1| 1E-144 component 4 (C) 259 0 3.A.1.4.1(6) 160 5E-41 2
COG0410: ABC-type branched-chain amino acid transport systems, ATPase component 5 Contig446gene8 Contig446gene645 Contig361gene2485 Rme_5840 Contig72gene5841 gi|48772652|ref|ZP_00276994.1| 3E-134 component 5 (C) 237 0 3.A.1.4.1(6) 173 9E-45 2
COG0683: ABC-type branched-chain amino acid transport systems, periplasmic 5 Contig498gene9 Contig498gene1271 Contig355gene1439 Rme_0752 Contig59gene753 gi|48767501|ref|ZP_00271856.1| 0 component 1 (R) 479 1 3.A.1.4.1(6) 379 1E-106 2
COG0559: Branched-chain amino acid ABC-type transport system, permease components 5 Contig498gene10 Contig498gene1272 Contig355gene1440 Rme_0753 Contig59gene754 gi|48767500|ref|ZP_00271855.1| 9E-151 component 2 (M) 308 9 3.A.1.4.1(6) 303 8E-84 2
5 Contig498gene1273 Contig355gene1441 component 3 159 4 3.A.1.4.1(6) 114 3E-27 2
COG0683: ABC-type branched-chain amino acid transport systems, periplasmic 5 Contig587gene17 Contig587gene2886 Contig370gene4963 Rme_4520 Contig71gene4521 gi|48770884|ref|ZP_00275227.1| 0 (R) 425 1 3.A.1.4.1(6) 69 7E-13 3
COG4177: ABC-type branched-chain amino acid transport system, permease component 5 Contig594gene9 Contig594gene3071 Contig355gene1441 Rme_0754 Contig59gene755 gi|48767499|ref|ZP_00271854.1| 0 component 1 279 6 3.A.1.4.1(6) 276 1E-75 2
COG0411: ABC-type branched-chain amino acid transport systems, ATPase component 5 Contig594gene10 Contig594gene3072 Contig355gene1442 Rme_0755 Contig59gene756 gi|48767498|ref|ZP_00271853.1| 2E-141 component 2 (C) 255 0 3.A.1.4.1(6) 321 3E-89 2
COG0410: ABC-type branched-chain amino acid transport systems, ATPase component 5 Contig594gene11 Contig594gene3073 Contig355gene1443 Rme_0756 Contig59gene757 gi|48767497|ref|ZP_00271852.1| 2E-128 component 3 (C) 233 0 3.A.1.4.1(6) 308 2E-85 2
5 Contig614gene3545 Contig340gene370 368 0 3.A.1.4.1(6) 67 1E-12 3
COG0559: Branched-chain amino acid ABC-type transport system, permease components 5 Contig648gene24 Contig648gene4621 Contig375gene8086 Rme_5271 Contig72gene5272 gi|48771942|ref|ZP_00276284.1| 3E-141 component 1 (M) 287 7 3.A.1.4.X 165 3E-42 2
COG4177: ABC-type branched-chain amino acid transport system, permease component 5 Contig648gene25 Contig648gene4622 Contig375gene8087 Rme_5272 Contig72gene5273 gi|48771943|ref|ZP_00276285.1| 2E-147 component 2 (M) 342 10 3.A.1.4.X 104 6E-24 2
COG0411: ABC-type branched-chain amino acid transport systems, ATPase component 5 Contig648gene26 Contig648gene4623 Contig375gene8088 Rme_5273 Contig72gene5274 gi|48771944|ref|ZP_00276286.1| 3E-121 component 3 (C) 254 1 3.A.1.4.1(6) 177 7E-46 2
COG0410: ABC-type branched-chain amino acid transport systems, ATPase component 5 Contig648gene27 Contig648gene4624 Contig375gene8089 Rme_5274 Contig72gene5275 gi|48771945|ref|ZP_00276287.1| 3E-130 component 4 (C) 235 2 3.A.1.4.1(6) 225 2E-60 2
5 Contig648gene4625 Contig375gene8090 component 5 (R) 383 1 3.A.1.4.X 75 5E-15 3
COG0410: ABC-type branched-chain amino acid transport systems, ATPase component 5 Contig668gene1 Contig668gene5423 Contig349gene849 Rme_1945 Contig65gene1946 gi|48769768|ref|ZP_00274113.1| 2,6E-87 174 0 3.A.1.4.1(6) 116 8E-28 2
COG0683: ABC-type branched-chain amino acid transport systems, periplasmic 5 Contig703gene48 Contig703gene7945 Contig372gene5996 Rme_2352 Contig66gene2353 gi|48768308|ref|ZP_00272658.1| 0 (R) 379 2 3.A.1.4.1(6) 67 1E-12 3
COG0411: ABC-type branched-chain amino acid transport systems, ATPase component 5 Contig705gene99 Contig705gene8184 Contig374gene7472 Rme_4854 Contig71gene4855 gi|48770389|ref|ZP_00274732.1| 0 component 1 (C) 313 0 3.A.1.4.1(6) 193 9E-51 2
COG0559: Branched-chain amino acid ABC-type transport system, permease components 5 Contig705gene100 Contig705gene8185 Contig374gene7473 Rme_4855 Contig71gene4856 gi|48770388|ref|ZP_00274731.1| 2E-150 component 2 (M) 304 8 3.A.1.4.1(6) 114 5E-27 2
COG4177: ABC-type branched-chain amino acid transport system, permease component 5 Contig705gene101 Contig705gene8186 Contig374gene7474 Rme_4856 Contig71gene4857 gi|48770387|ref|ZP_00274730.1| 8E-170 component 3 (M) 358 10 3.A.1.4.X 82 6E-17 3
COG0410: ABC-type branched-chain amino acid transport systems, ATPase component 5 Contig705gene103 Contig705gene8188 Contig374gene7476 Rme_4858 Contig71gene4859 gi|48770385|ref|ZP_00274728.1| 2E-152 component 4 (C) 271 0 3.A.1.4.1(6) 172 2E-44 2
5 Contig710gene8789 Contig375gene9380 component 5 275 0 3.A.1.4.X 174 6E-45 2
5 Contig710gene8790 Contig375gene9381 component 6 (C) 241 0 3.A.1.4.1(6) 157 4E-40 2
5 Contig710gene8791 Contig375gene9382 component 7 (R) 402 1 3.A.1.4.X 59 5E-10 3
5 Contig710gene8797 Contig375gene9387 component 1 462 1 3.A.1.4.X 60 3E-10 3
5 Contig710gene8798 Contig375gene9388 component 2 (M) 350 9 3.A.1.4.1(6) 83 3E-17 3
5 Contig710gene8799 Contig375gene9389 component 3 (C) 617 10 3.A.1.4.1(6) 169 3E-43 2
5 Contig710gene8800 Contig375gene9390 component 4 (C) 247 0 3.A.1.4.X 206 1E-54 2
0
COG0683: ABC-type branched-chain amino acid transport systems, periplasmic 5 Contig342gene2 Contig342gene15 Contig361gene2481 Rme_5836 Contig72gene5837 gi|48772656|ref|ZP_00276998.1| 0 component 1 (R) 416 1 3.A.1.4.X 72 6E-14 3 chromosome
COG0559: Branched-chain amino acid ABC-type transport system, permease components Leucine/proline/alanine/serine/glycine (and possibly histidine) porter 5 Contig342gene3 Contig342gene16 Contig361gene2482 Rme_5837 Contig72gene5838 gi|48772655|ref|ZP_00276997.1| 2E-128 component 2 (M) 323 8 3.A.1.4.2(5) 68 8E-13 3
COG0559: Branched-chain amino acid ABC-type transport system, permease components 5 Contig543gene9 Contig543gene2015 Contig375gene9184 Rme_6407 Contig72gene6408 gi|48771696|ref|ZP_00276038.1| 6E-122 (M) 288 7 3.A.1.4.2(5) 79 4E-16 3
COG0683: ABC-type branched-chain amino acid transport systems, periplasmic 5 Contig544gene8 Contig544gene2030 Contig366gene3541 Rme_1780 Contig64gene1781 gi|48768706|ref|ZP_00273054.1| 0 (R) 389 1 3.A.1.4.2(5) 61 1E-10 3
COG1137: ABC-type (unclassified) transport system, ATPase component [Ralstonia 5 Contig669gene5508 Contig374gene6823 gi|48770301|ref|ZP_00274644.1| 1E-137 (C) 263 0 3.A.1.4.2(5) 147 8E-37 2
0
COG0683: ABC-type branched-chain amino acid transport systems, periplasmic General L- (and D-)amino acid uptake porter (transports acidic, basic, polar, semipolar and hydrophobic amino acids). The amino and carboxyl groups do not need to be _ since _-aminobutyric acid (GABA) is a substrate. The system may function with additional binding proteins since L-alanine uptake is not dependent on BraC. 5 Contig376gene3 Contig376gene166 Contig350gene946 Rme_2890 Contig68gene2891 gi|48768569|ref|ZP_00272918.1| 0 (R) 401 1 3.A.1.4.3(4) 201 6E-53 2 chromosome
5 Contig710gene8793 Contig375gene9383 component 1 (M) 294 8 3.A.1.4.3(4) 103 2E-23 2
5 Contig710gene8794 Contig375gene9384 component 2 (M) 344 9 3.A.1.4.3(4) 81 1E-16 3
5 Contig710gene8822 Contig375gene9412 (R) 383 1 3.A.1.4.3(4) 167 1E-42 2
0
COG0683: ABC-type branched-chain amino acid transport systems, periplasmic The high-affinity (<1  M) urea porter 5 Contig420gene5 Contig420gene433 Contig358gene1906 Rme_5959 Contig72gene5960 gi|48772452|ref|ZP_00276794.1| 0 (R) 412 1 3.A.1.4.4(5) 62 5E-11 3 chromosome
        45   5   Contig517gene1569 .Contig370gene5000                 112 0 3.A.1.4.4(5) 58 1E-10 3
- PepT (5) COG0444: ABC-type dipeptide/oligopeptide/nickel transport system, ATPase Peptide, Opine, Nickel B 17 Contig346gene32 Contig373gene6123 gi|48769900|ref|ZP_00274244.1| 2E-178 component 1 327 0 3.A.1.5.X 285 3E-78 2
COG4608: ABC-type oligopeptide transport system, ATPase component [Ralstonia 17 Contig346gene2 Contig346gene33 Contig373gene6124 Rme_3344 Contig70gene3345 gi|48769901|ref|ZP_00274245.1| 7E-151 component 2 294 0 3.A.1.5.X 278 2E-76 2
COG0747: ABC-type dipeptide transport system, periplasmic component [Ralstonia 17 Contig402gene2 Contig402gene304 Contig373gene6120 Rme_3340 Contig70gene3341 gi|48769897|ref|ZP_00274241.1| 0 component 1 (R) 527 0 3.A.1.5.X 92 9E-20 3
17 Contig402gene306 Contig373gene6122 component 2 240 4 3.A.1.5.X 100 6E-23 2
COG0601: ABC-type dipeptide/oligopeptide/nickel transport systems, permease Dipeptide porter. Also transports _-aminolevulinic acid (ALA) 5 Contig492gene1 Contig492gene1186 .Contig336gene262 Rme_1108 Contig61gene986 gi|48768163|ref|ZP_00272514.1| 4,2E-57 component 1 123 2 3.A.1.5.2(5) 110 2E-26 2
COG1173: ABC-type dipeptide/oligopeptide/nickel transport systems, permease 5 Contig492gene2 Contig492gene1187 Contig336gene263 Rme_1109 Contig61gene987 gi|48768164|ref|ZP_00272515.1| 5E-145 component 2 (M) 300 6 3.A.1.5.X 179 2E-46 2
COG2362: D-aminopeptidase [Ralstonia metallidurans CH34] 5 Contig492gene4 Contig492gene1189 Contig336gene265 Rme_1111 Contig61gene989 gi|48768166|ref|ZP_00272517.1| 1E-152 component 3 275 0 3.A.1.5.2(5) 127 5E-31 2
COG4166: ABC-type oligopeptide transport system, periplasmic component [Ralstonia 5 Contig496gene8 Contig496gene1244 Contig362gene2744 Rme_2040 Contig65gene2041 gi|48769623|ref|ZP_00273968.1| 0 component 1 628 1 3.A.1.5.2(5) 67 2E-12 3
COG4174: ABC-type uncharacterized transport system, permease component [Ralstonia 5 Contig496gene9 Contig496gene1245 Contig362gene2745 Rme_2041 Contig65gene2042 gi|48769622|ref|ZP_00273967.1| 5E-174 component 2 (M) 349 6 3.A.1.5.2(5) 155 2E-39 2
5 Contig496gene1246 Contig362gene2746 component 3 (M) 376 6 3.A.1.5.2(5) 131 6E-32 2
5 Contig496gene1247 Contig362gene2747 component 4 (C) 549 0 3.A.1.5.2(5) 231 1E-61 2
COG1135: ABC-type metal ion transport system, ATPase component [Ralstonia 5 Contig529gene19 Contig529gene1777 Contig370gene4823 Rme_4429 Contig71gene4430 gi|48771069|ref|ZP_00275412.1| 0 184 0 3.A.1.5.2(5) 80 9E-17 3
COG0601: ABC-type dipeptide/oligopeptide/nickel transport systems, permease 7 Contig535gene2 Contig535gene1868 Contig374gene7247 Rme_2529 Contig67gene2530 gi|48769176|ref|ZP_00273523.1| 5E-171 component 1 (M) 318 6 3.A.1.5.X 189 2E-49 2
COG1173: ABC-type dipeptide/oligopeptide/nickel transport systems, permease 7 Contig535gene3 Contig535gene1869 Contig374gene7248 Rme_2530 Contig67gene2531 gi|48769177|ref|ZP_00273524.1| 5E-133 component 2 (M) 308 6 3.A.1.5.X 155 3E-39 2
COG0747: ABC-type dipeptide transport system, periplasmic component [Ralstonia 7 Contig535gene4 Contig535gene1870 Contig374gene7249 Rme_2531 Contig67gene2532 gi|48769178|ref|ZP_00273525.1| 0 component 3 (R) 575 1 3.A.1.5.X 107 2E-24 2
COG0444: ABC-type dipeptide/oligopeptide/nickel transport system, ATPase 7 Contig535gene5 Contig535gene1871 Contig374gene7250 Rme_2532 Contig67gene2533 gi|48769179|ref|ZP_00273526.1| 0 component 4 (C) 325 0 3.A.1.5.X 320 9E-89 2
COG4608: ABC-type oligopeptide transport system, ATPase component [Ralstonia 7 Contig535gene6 Contig535gene1872 Contig374gene7251 Rme_2533 Contig67gene2534 gi|48769180|ref|ZP_00273527.1| 0 component 5 (C) 367 0 3.A.1.5.X 351 3E-98 2
COG0747: ABC-type dipeptide transport system, periplasmic component [Ralstonia Agrocinopine (an opine)/Agrocin 84 (an antibiotic) porter 7 Contig541gene5 Contig541gene1973 Contig355gene1375 Rme_0685 Contig59gene686 gi|48767515|ref|ZP_00271870.1| 0 (R) 545 1 3.A.1.5.4(5) 135 6E-33 2
COG0747: ABC-type dipeptide transport system, periplasmic component [Ralstonia Nickel porter 1 Contig590gene16 Contig590gene2977 Contig357gene1662 Rme_5553 Contig72gene5554 gi|48772423|ref|ZP_00276765.1| 3E-139 273 1 3.A.1.5.3(5) 103 1E-23 2
COG0747: ABC-type dipeptide transport system, periplasmic component [Ralstonia 17 Contig614gene9 Contig614gene3553 Contig340gene353 Rme_0242 Contig50gene242 gi|48767063|ref|ZP_00271428.1| 0 component 1 (R) 535 1 3.A.1.5.X 139 4E-34 2
COG0601: ABC-type dipeptide/oligopeptide/nickel transport systems, permease 17 Contig614gene10 Contig614gene3554 Contig340gene354 Rme_0243 Contig50gene243 gi|48767064|ref|ZP_00271429.1| 3E-158 component 2 (M) 325 6 3.A.1.5.X 179 2E-46 2
COG1173: ABC-type dipeptide/oligopeptide/nickel transport systems, permease 17 Contig614gene11 Contig614gene3555 Contig340gene355 Rme_0244 Contig50gene244 gi|48767065|ref|ZP_00271430.1| 3E-136 component 3 (M) 309 5 3.A.1.5.X 125 3E-30 2
COG0444: ABC-type dipeptide/oligopeptide/nickel transport system, ATPase 17 Contig614gene12 Contig614gene3556 Contig340gene356 Rme_0245 Contig50gene245 gi|48767066|ref|ZP_00271431.1| 0 component 4 (C) 332 0 3.A.1.5.X 284 6E-78 2
COG4608: ABC-type oligopeptide transport system, ATPase component [Ralstonia 17 Contig614gene13 Contig614gene3557 Contig340gene357 Rme_0246 Contig50gene246 gi|48767067|ref|ZP_00271432.1| 0 component 5 (C) 354 0 3.A.1.5.X 276 1E-75 2
COG0747: ABC-type dipeptide transport system, periplasmic component [Ralstonia 17 Contig656gene1 Contig656gene4927 Contig358gene1735 Rme_5554 Contig72gene5555 gi|48772426|ref|ZP_00276768.1| 1E-162 component 1 309 0 3.A.1.5.X 84 8E-18 3
COG0601: ABC-type dipeptide/oligopeptide/nickel transport systems, permease 17 Contig656gene2 Contig656gene4928 Contig358gene1736 Rme_5555 Contig72gene5556 gi|48772427|ref|ZP_00276769.1| 0 component 2 (M) 347 6 3.A.1.5.X 190 9E-50 2
COG1173: ABC-type dipeptide/oligopeptide/nickel transport systems, permease 17 Contig656gene3 Contig656gene4929 Contig358gene1737 Rme_5556 Contig72gene5557 gi|48772428|ref|ZP_00276770.1| 2E-139 component 3 (M) 279 6 3.A.1.5.X 169 1E-43 2
COG1123: ATPase components of various ABC-type transport systems, contain 17 Contig656gene4 Contig656gene4930 .Contig358gene1738 Rme_5557 Contig72gene5558 gi|48772429|ref|ZP_00276771.1| 0 component 4 589 0 3.A.1.5.X 266 3E-72 2
COG0747: ABC-type dipeptide transport system, periplasmic component [Ralstonia 17 Contig664gene49 Contig664gene5269 Contig361gene2374 Rme_5720 Contig72gene5721 gi|48772720|ref|ZP_00277062.1| 0 component 1 (R) 586 0 3.A.1.5.X 99 7E-22 2
COG0601: ABC-type dipeptide/oligopeptide/nickel transport systems, permease 17 Contig664gene50 Contig664gene5270 Contig361gene2375 Rme_5721 Contig72gene5722 gi|48772721|ref|ZP_00277063.1| 3E-180 component 2 (M) 316 6 3.A.1.5.X 210 8E-56 2
COG1173: ABC-type dipeptide/oligopeptide/nickel transport systems, permease 17 Contig664gene51 Contig664gene5271 Contig361gene2376 Rme_5722 Contig72gene5723 gi|48772722|ref|ZP_00277064.1| 4E-137 component 3 (M) 295 5 3.A.1.5.X 139 3E-34 2
COG4608: ABC-type oligopeptide transport system, ATPase component [Ralstonia 17 Contig664gene52 Contig664gene5272 Contig361gene2377 Rme_5723 Contig72gene5724 gi|48772723|ref|ZP_00277065.1| 0 component 4 (C) 359 0 3.A.1.5.X 263 9E-72 2
COG0444: ABC-type dipeptide/oligopeptide/nickel transport system, ATPase 33 17 Contig664gene53 Contig664gene5273 Contig361gene2378 Rme_5724 Contig72gene5725 gi|48772724|ref|ZP_00277066.1| 1E-170 component 5 (C) 337 0 3.A.1.5.X 246 1E-66 2
- SulT (6) COG1613: ABC-type sulfate transport system, periplasmic component [Ralstonia Sulfate, Tungstate B   Sulfate/thiosulfate porter 2 Contig644gene23 Contig644gene4501 Contig351gene1029 Rme_1076 Contig61gene954   gi|48768123|ref|ZP_00272474.1| 0     (R) 335 1 3.A.1.6.1(5) 443 1E-126 2
COG0555: ABC-type sulfate transport system, permease component [Ralstonia 2 Contig644gene30 Contig644gene4508 Contig351gene1036 Rme_1083 Contig61gene961 gi|48768130|ref|ZP_00272481.1| 9E-143 component 1 (M) 335 6 3.A.1.6.1(5) 246 1E-66 2
COG4208: ABC-type sulfate transport system, permease component [Ralstonia 2 Contig644gene31 Contig644gene4509 Contig351gene1037 Rme_1084 Contig61gene962 gi|48768131|ref|ZP_00272482.1| 4E-154 component 2 (M) 305 6 3.A.1.6.1(5) 277 6E-76 2
COG1118: ABC-type sulfate/molybdate transport systems, ATPase component 2 Contig644gene32 Contig644gene4510 Contig351gene1038 Rme_1085 Contig61gene963 gi|48768132|ref|ZP_00272483.1| 0 component 3 (C) 367 0 3.A.1.6.1(5) 289 2E-79 2
COG1127: ABC-type transport system involved in resistance to organic solvents, 2 Contig673gene16 Contig673gene5678 Contig374gene6978 Rme_3964 Contig71gene3965 gi|48770533|ref|ZP_00274876.1| 3E-155 (C) 279 0 3.A.1.6.1(5) 143 1E-35 2
0
  COG1127: ABC-type transport system involved in resistance to organic solvents,     6 Sulfate porter 2 Contig617gene8 Contig617gene3604 Contig367gene3795 Rme_1433 Contig63gene1434   gi|48767791|ref|ZP_00272144.1| 2E-124       243 0 3.A.1.6.3(4) 122 1E-29 2 chromosome
- PhoT (7) COG0226: ABC-type phosphate transport system, periplasmic component [Ralstonia Phosphate B Phosphate porter 2 Contig528gene4 Contig528gene1746 Contig362gene2718 Rme_2022 Contig65gene2023 gi|48769652|ref|ZP_00273997.1| 3E-163 component 1 (R) 343 1 3.A.1.7.1(4) 374 1E-105 2
COG0573: ABC-type phosphate transport system, permease component [Ralstonia 2 Contig528gene5 Contig528gene1747 Contig362gene2719 Rme_2023 Contig65gene2024 gi|48769651|ref|ZP_00273996.1| 2E-161 component 2 (M) 321 6 3.A.1.7.1(4) 430 1E-122 2
COG0581: ABC-type phosphate transport system, permease component [Ralstonia 2 Contig528gene6 Contig528gene1748 Contig362gene2720 Rme_2024 Contig65gene2025 gi|48769650|ref|ZP_00273995.1| 5E-168 component 3 (M) 300 6 3.A.1.7.1(4) 406 1E-115 2
COG1117: ABC-type phosphate transport system, ATPase component [Ralstonia 2 Contig528gene7 Contig528gene1749 Contig362gene2721 Rme_2025 Contig65gene2026 gi|48769649|ref|ZP_00273994.1| 2E-142 component 4 (C) 262 0 3.A.1.7.1(4) 410 1E-116 2
COG0226: ABC-type phosphate transport system, periplasmic component [Ralstonia 2 Contig703gene94 Contig703gene7991 Contig372gene5607 Rme_2193 Contig66gene2194 gi|48768355|ref|ZP_00272705.1| 0 (R) 333 1 3.A.1.7.1(4) 295 3E-81 2
6 2 Contig711gene9005 Contig375gene8133 (R) 355 3 3.A.1.7.1(4) 228 3E-61 2
- MolT (8) COG4662: ABC-type tungstate transport system, periplasmic component [Ralstonia Molybdate B   Molybdate porter 1 Contig437gene6 Contig437gene567 Contig372gene5726 Rme_2784 Contig68gene2785   gi|48768618|ref|ZP_00272967.1| 7E-117     (R) 232 5 3.A.1.8.1(3) 89 3E-19 3
COG0555: ABC-type sulfate transport system, permease component [Ralstonia 1 Contig665gene35 Contig665gene5316 Contig375gene7940 Rme_5170 Contig72gene5171 gi|48771751|ref|ZP_00276093.1| 8E-130 272 6 3.A.1.8.1(3) 94 8E-21 2
COG0725: ABC-type molybdate transport system, periplasmic component [Ralstonia 1 Contig674gene25 Contig674gene5739 Contig365gene3396 Rme_4306 Contig71gene4307 gi|48771227|ref|ZP_00275570.1| 2E-117 component 1 (R) 258 1 3.A.1.8.1(3) 111 5E-26 2
  COG4149: ABC-type molybdate transport system, permease component [Ralstonia     4   1 Contig674gene27 Contig674gene5741 Contig365gene3398 Rme_4307 Contig71gene4308   gi|48771228|ref|ZP_00275571.1| 2E-112   component 2 (M) 238 5 3.A.1.8.1(3) 138 3E-34 2
- PhnT (9) COG1101: ABC-type uncharacterized transport system, ATPase component [Ralstonia Phosphonate B Phosphonate/organophosphate ester porter (broad specificity) 2 Contig409gene5 Contig409gene351 Contig349gene904 Rme_1927 Contig65gene1928 gi|48769789|ref|ZP_00274134.1| 3E-138 (C) 264 0 3.A.1.9.1(3) 94 1E-20 2
COG3221: ABC-type phosphate/phosphonate transport system, periplasmic component 2 Contig507gene1 Contig507gene1405 Contig370gene4744 Rme_4201 Contig71gene4202 gi|48771030|ref|ZP_00275373.1| 4E-156 component 1 287 0 3.A.1.9.1(3) 287 6E-79 2
COG3639: ABC-type phosphate/phosphonate transport system, permease component 2 Contig507gene1406 Contig370gene4745 gi|48771031|ref|ZP_00275374.1| 9E-138 component 2 (M) 349 6 3.A.1.9.1(3) 317 8E-88 2
2 Contig658gene5019 Contig372gene5787 component 1 (C) 279 0 3.A.1.9.1(3) 181 4E-47 2
2 Contig658gene5020 Contig372gene5788 component 2 (R) 292 1 3.A.1.9.1(3) 87 1E-18 3
COG3639: ABC-type phosphate/phosphonate transport system, permease component 6 2 Contig658gene20 Contig658gene5021 Contig372gene5789 Rme_2822 Contig68gene2823 gi|48768692|ref|ZP_00273041.1| 3E-123 component 3 (M) 266 5 3.A.1.9.1(3) 112 2E-26 2
- POPT(11) COG3842: ABC-type spermidine/putrescine transport systems, ATPase components Polyamine, Opine, Phosphonate B   Polyamine (putrescine/spermidine) porter 5 Contig454gene13 Contig454gene730 Contig364gene3011 Rme_4016 Contig71gene4017   gi|48770626|ref|ZP_00274969.1| 0   component 1 (C) 364 0 3.A.1.11.1(4) 231 4E-62 2
COG1176: ABC-type spermidine/putrescine transport system, permease component I 5 Contig454gene14 Contig454gene731 Contig364gene3012 Rme_4017 Contig71gene4018 gi|48770627|ref|ZP_00274970.1| 0 component 2 (M) 338 6 3.A.1.11.1(4) 204 8E-54 2
5 Contig454gene732 Contig364gene3013 component 3 260 6 3.A.1.11.1(4) 215 2E-57 2
COG0687: Spermidine/putrescine-binding periplasmic protein [Ralstonia 5 Contig454gene16 Contig454gene733 Contig364gene3014 Rme_4019 Contig71gene4020 gi|48770629|ref|ZP_00274972.1| 0 component 4 (R) 362 1 3.A.1.11.X 128 4E-31 2
COG2011: ABC-type metal ion transport system, permease component [Ralstonia 5 Contig652gene5 Contig652gene4749 Contig371gene5479 Rme_3125 Contig69gene3126 gi|48769425|ref|ZP_00273771.1| 5,2E-95 (M) 259 6 3.A.1.11.1(4) 48 6E-07 3
COG1840: ABC-type Fe3+ transport system, periplasmic component [Ralstonia 5 Contig665gene34 Contig665gene5315 Contig375gene7939 Rme_5169 Contig72gene5170 gi|48771750|ref|ZP_00276092.1| 0 (R) 340 1 3.A.1.11.X 80 1E-16 3
COG1177: ABC-type spermidine/putrescine transport system, permease component II 5 Contig665gene37 Contig665gene5318 Contig375gene7942 Rme_5172 Contig72gene5173 gi|48771752|ref|ZP_00276094.1| 6E-137 (M) 291 6 3.A.1.11.X 82 4E-17 3
0
  COG1122: ABC-type cobalt transport system, ATPase component [Ralstonia     8 Putrescine porter 5 Contig437gene7 Contig437gene568 Contig372gene5727 Rme_2785 Contig68gene2786   gi|48768619|ref|ZP_00272968.1| 5E-122     (C) 229 0 3.A.1.11.2(4) 95 3E-21 2 chromosome
- QAT (12) COG2011: ABC-type metal ion transport system, permease component [Ralstonia Quaternary Amine B Uptake system for hisitidine, proline, proline-betaine and glycine-betaine 5 Contig529gene20 Contig529gene1778 Contig370gene4824 Rme_4430 Contig71gene4431 gi|48771068|ref|ZP_00275411.1| 8,9E-71 (M) 217 5 3.A.1.12.6(3) 54 7E-09 3
COG1732: Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type Choline porter 5 Contig590gene3 Contig590gene2964 Contig357gene1649 Rme_5543 Contig72gene5544 gi|48772410|ref|ZP_00276752.1| 0 (R) 516 6 3.A.1.12.3(4) 133 2E-32 2
0
COG1732: Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type Uptake system for choline, L-carnitine, D-carnitine, glycine betaine, proline betaine, crotonobetaine, _-butyrobetaine, dimethylsulfonioacetate, dimethylsulfoniopropionate, ectoine and choline-O-sulfate 5 Contig643gene1 Contig643gene4445 Contig370gene4872 Rme_4457 Contig71gene4458 gi|48771004|ref|ZP_00275347.1| 7,3E-70 component 1 187 0 3.A.1.12.4(4) 100 4E-23 2 chromosome
COG1174: ABC-type proline/glycine betaine transport systems, permease component 5 Contig643gene2 Contig643gene4446 Contig370gene4873 Rme_4458 Contig71gene4459 gi|48771003|ref|ZP_00275346.1| 1,4E-94 component 2 (M) 216 5 3.A.1.12.4(4) 136 1E-33 2
COG1125: ABC-type proline/glycine betaine transport systems, ATPase components 5 5 Contig643gene3 Contig643gene4447 Contig370gene4874 Rme_4459 Contig71gene4460 gi|48771002|ref|ZP_00275345.1| 0 component 3 (C) 398 0 3.A.1.12.4(4) 309 2E-85 2
- VB12T(13) COG0614: ABC-type Fe3+-hydroxamate transport system, periplasmic component Vitamin B12 B 1 Vitamin B12 porter 14 Contig631gene23 Contig631gene4059 Contig366gene3515 Rme_1766 Contig64gene1767   gi|48768743|ref|ZP_00273091.1| 3E-161     (R) 300 0 3.A.1.13.1(3) 138 3E-34 2
- FeCT (14) COG0609: ABC-type Fe3+-siderophore transport system, permease component Iron Chelate B 1 Contig631gene12 Contig631gene4048 Contig366gene3586 Rme_1526 Contig64gene1527 gi|48768737|ref|ZP_00273085.1| 6E-124 component 1 (M) 335 9 3.A.1.14.X 134 1E-32 2
COG1120: ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase 1 Contig631gene13 Contig631gene4049 Contig366gene3587 Rme_1527 Contig64gene1528 gi|48768738|ref|ZP_00273086.1| 7E-138 component 2 (C) 269 0 3.A.1.14.X 122 2E-29 2
Heme (hemin) uptake porter 1 Contig681gene6069 Contig373gene6359 component 1 (R) 283 1 3.A.1.14.5(3) 171 4E-44 2
COG0609: ABC-type Fe3+-siderophore transport system, permease component 1 Contig681gene4 Contig681gene6070 Contig373gene6360 Rme_3523 Contig70gene3524 gi|48770172|ref|ZP_00274516.1| 4E-154 component 2 (M) 333 9 3.A.1.14.5(3) 249 2E-67 2
COG4559: ABC-type hemin transport system, ATPase component [Ralstonia 5 1 Contig681gene5 Contig681gene6071 Contig373gene6361 Rme_3524 Contig70gene3525 gi|48770173|ref|ZP_00274517.1| 3E-126 component 3 (C) 261 0 3.A.1.14.5(3) 127 6E-31 2
- MZT (15) COG3910: Predicted ATPase [Ralstonia metallidurans CH34] Manganese, Zinc, Iron Chelate B 1 Manganese (Mn2+) porter 1 Contig567gene1 Contig567gene2434 Contig375gene9102 Rme_6357 Contig72gene6358   gi|48771808|ref|ZP_00276150.1| 9E-142       264 0 3.A.1.15.1(3) 39 0,0004 3
- NitT (16) COG0715: ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic Nitrate, Nitrite, Cyanate B 2 Contig660gene3 Contig660gene5062 Contig374gene6840 Rme_3897 Contig71gene3898 gi|48770327|ref|ZP_00274670.1| 0 component 1 (R) 434 3 3.A.1.16.X 264 8E-72 2
COG0600: ABC-type nitrate/sulfonate/bicarbonate transport system, permease Nitrate/nitrite porter 2 Contig660gene4 Contig660gene5063 Contig374gene6841 Rme_3898 Contig71gene3899 gi|48770328|ref|ZP_00274671.1| 5E-142 component 2 (M) 303 6 3.A.1.16.1(4) 187 3E-46 2
2 Contig660gene5 Contig660gene5064 Contig374gene6842 Rme_3899 Contig71gene3900 gi|14530747|emb|CAC42413.1| 2E-147 component 3 (C) 267 1 3.A.1.16.1(4) 283 7E-78 2
0
COG0715: ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic Cyanate porter 2 Contig488gene7 Contig488gene1136 Contig360gene2192 Rme_2057 Contig65gene2058 gi|48769599|ref|ZP_00273944.1| 0 component 1 (R) 347 2 3.A.1.16.2(3) 57 1E-09 3 chromosome
COG1116: ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase 2 Contig488gene8 Contig488gene1137 Contig360gene2193 Rme_2058 Contig65gene2059 gi|48769598|ref|ZP_00273943.1| 4E-154 component 2 (C) 270 0 3.A.1.16.2(3) 192 2E-50 2
COG0715: ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic 2 Contig520gene15 Contig520gene1626 Contig362gene2587 Rme_1876 Contig65gene1877 gi|48769685|ref|ZP_00274030.1| 0 component 1 (R) 341 1 3.A.1.16.2(3) 58 7E-10 3
COG0600: ABC-type nitrate/sulfonate/bicarbonate transport system, permease 2 Contig520gene16 Contig520gene1627 Contig362gene2588 Rme_1877 Contig65gene1878 gi|48769686|ref|ZP_00274031.1| 9E-162 component 2 (M) 347 8 3.A.1.16.2(3) 95 5E-21 2
COG1116: ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase 2 Contig520gene1628 Contig362gene2589 gi|48769687|ref|ZP_00274032.1| 4E-141 component 3 (C) 262 0 3.A.1.16.X 201 4E-53 2
COG0600: ABC-type nitrate/sulfonate/bicarbonate transport system, permease 2 Contig654gene4 Contig654gene4843 Contig350gene956 Rme_2897 Contig68gene2898 gi|48768560|ref|ZP_00272909.1| 6E-137 component 1 (M) 291 6 3.A.1.16.2(3) 84 7E-18 2
COG1116: ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase 2 Contig654gene5 Contig654gene4844 Contig350gene957 Rme_2898 Contig68gene2899 gi|48768559|ref|ZP_00272908.1| 8E-147 component 2 (C) 259 0 3.A.1.16.2(3) 201 4E-53 2
COG1116: ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase 2 Contig694gene7106 Contig364gene3098 gi|48770693|ref|ZP_00275036.1| 4E-144 component 1 (C) 256 1 3.A.1.16.2(3) 216 1E-57 2
2 Contig695gene7208 Contig375gene8294 component 2 (C) 304 0 3.A.1.16.2(3) 202 2E-53 2
0
COG4986: ABC-type anion transport system, duplicated permease component 13 Bicarbonate porter 6 Contig678gene39 Contig678gene5951 Contig367gene3893 Rme_1325 Contig63gene1326 gi|48767717|ref|ZP_00272070.1| 0 (M) 581 12 3.A.1.16.3(4) 69 1E-12 3 chromosome
- TauT (17) COG0600: ABC-type nitrate/sulfonate/bicarbonate transport system, permease Taurine B   Taurine (2-aminoethane sulfonate) porter 2 Contig488gene9 Contig488gene1138 Contig360gene2194 Rme_2059 Contig65gene2060   gi|48769597|ref|ZP_00273942.1| 6E-143     (M) 263 5 3.A.1.17.1(3) 116 1E-27 2
0
COG0715: ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic Aromatic sulfonate porter 2 Contig644gene24 Contig644gene4502 Contig351gene1030 Rme_1077 Contig61gene955 gi|48768124|ref|ZP_00272475.1| 1E-176 component 1 (R) 345 1 3.A.1.17.2(3) 366 1E-103 2 chromosome
COG0600: ABC-type nitrate/sulfonate/bicarbonate transport system, permease 2 Contig644gene26 Contig644gene4504 Contig351gene1032 Rme_1079 Contig61gene957 gi|48768126|ref|ZP_00272477.1| 4E-124 component 2 (M) 268 6 3.A.1.17.2(3) 285 1E-78 2
COG1116: ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase 2 Contig644gene27 Contig644gene4505 Contig351gene1033 Rme_1080 Contig61gene958 gi|48768127|ref|ZP_00272478.1| 2E-139 component 3 (C) 291 0 3.A.1.17.2(3) 250 8E-68 2
0
COG0715: ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic Taurine (2-aminoethane sulfonate) porter 2 Contig654gene3 Contig654gene4842 Contig350gene955 Rme_2896 Contig68gene2897 gi|48768561|ref|ZP_00272910.1| 1E-170 (R) 317 3 3.A.1.17.1(3) 47 1E-06 3 chromosome
COG0715: ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic 2 Contig675gene21 Contig675gene5771 Contig359gene1981 Rme_1252 Contig62gene1253 gi|48767981|ref|ZP_00272333.1| 0 component 1 (R) 352 1 3.A.1.17.1(3) 46 4E-06 3
COG1116: ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase 2 Contig675gene22 Contig675gene5772 Contig359gene1982 Rme_1253 Contig62gene1254 gi|48767980|ref|ZP_00272332.1| 2E-162 component 2 (C) 281 0 3.A.1.17.1(3) 182 1E-47 2
COG0600: ABC-type nitrate/sulfonate/bicarbonate transport system, permease 2 Contig675gene23 Contig675gene5773 Contig359gene1983 Rme_1254 Contig62gene1255 gi|48767979|ref|ZP_00272331.1| 2E-138 component 3 (M) 259 6 3.A.1.17.X 107 7E-25 2
COG1116: ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase 2 Contig678gene40 Contig678gene5952 Contig367gene3894 Rme_1326 Contig63gene1327 gi|48767718|ref|ZP_00272071.1| 0 (C) 448 0 3.A.1.17.1(3) 169 2E-43 2
COG0715: ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic 2 Contig694gene81 Contig694gene7105 Contig364gene3097 Rme_4648 Contig71gene4649 gi|48770694|ref|ZP_00275037.1| 0 component 1 (R) 348 1 3.A.1.17.X 58 7E-10 3
COG0715: ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic 2 Contig695gene75 Contig695gene7207 Contig375gene8293 Rme_6008 Contig72gene6009 gi|48772358|ref|ZP_00276700.1| 0 341 0 3.A.1.17.X 37 0,001 3
2 Contig694gene7108 Contig364gene3099 component 2 311 4 3.A.1.17.X 92 4E-20 3
  COG0600: ABC-type nitrate/sulfonate/bicarbonate transport system, permease     13   2 Contig695gene77 Contig695gene7209 Contig375gene8295 Rme_6009 Contig72gene6010   gi|48772356|ref|ZP_00276698.1| 2E-140     (M) 388 7 3.A.1.17.X 75 5E-15 3
uptake - total 180 - BIT (20) COG1840: ABC-type Fe3+ transport system, periplasmic component [Ralstonia Fe3+ B 1 The iron transporter, BitABCDEF 1 Contig699gene59 Contig699gene7562 Contig375gene7762 Rme_5049 Contig72gene5050   gi|48771525|ref|ZP_00275867.1| 0     (R) 371 1 3.A.1.20.1(6) 49 5E-07 3
- CPSE (101) COG1682: ABC-type polysaccharide/polyol phosphate export systems, permease Capsular polysaccharides B (gram neg.) Capsular polysaccharide exporter 11 Contig695gene46 Contig695gene7178 Contig375gene8669 Rme_5987 Contig72gene5988 gi|48772386|ref|ZP_00276728.1| 7E-141 component 1 (M) 262 6 3.A.1.101.1(2) 157 8E-40 2
COG1134: ABC-type polysaccharide/polyol phosphate transport system, ATPase 2 11 Contig695gene47 Contig695gene7179 Contig375gene8670 Rme_5988 Contig72gene5989 gi|48772385|ref|ZP_00276727.1| 4E-122 component 2 (C) 221 0 3.A.1.101.1(2) 191 4E-50 2
- LOSE (102) COG1131: ABC-type multidrug transport system, ATPase component [Ralstonia Lipooligosaccharide B (gram neg.)   Lipooligosaccharide exporter (nodulation proteins, NodIJ) 11 Contig372gene3 Contig372gene150 Contig358gene1866 Rme_5929 Contig72gene5930   gi|48772486|ref|ZP_00276828.1| 0     (C) 919 6 3.A.1.102.1(2) 147 4E-36 2
COG1131: ABC-type multidrug transport system, ATPase component [Ralstonia 11 Contig448gene2 Contig448gene665 Contig355gene1354 Rme_0675 Contig59gene676 gi|48767479|ref|ZP_00271834.1| 4E-164 component 1 (C) 303 1 3.A.1.102.1(2) 330 6E-92 2
COG0842: ABC-type multidrug transport system, permease component [Ralstonia 11 Contig448gene3 Contig448gene666 Contig355gene1355 Rme_0676 Contig59gene677 gi|48767480|ref|ZP_00271835.1| 7E-133 component 2 (M) 285 6 3.A.1.102.1(2) 240 6E-65 2
COG1131: ABC-type multidrug transport system, ATPase component [Ralstonia 11 Contig576gene2 Contig576gene2615 Contig359gene2065 Rme_1194 Contig62gene1195 gi|48768025|ref|ZP_00272377.1| 1E-179 (C) 328 1 3.A.1.102.1(2) 152 3E-38 2
COG1131: ABC-type multidrug transport system, ATPase component [Ralstonia 11 Contig617gene14 Contig617gene3610 Contig367gene3801 Rme_1439 Contig63gene1440 gi|48767785|ref|ZP_00272138.1| 5E-178 (C) 316 0 3.A.1.102.1(2) 169 1E-43 2
COG1131: ABC-type multidrug transport system, ATPase component [Ralstonia 11 Contig641gene4409 Contig362gene2639 gi|48768025|ref|ZP_00272377.1| 2,5E-16 (C) 83 0 3.A.1.102.1(2) 65 4E-13 3
  COG0842: ABC-type multidrug transport system, permease component [Ralstonia     7   11 Contig677gene28 Contig677gene5885 Contig362gene2647 Rme_1971 Contig65gene1972   gi|48769739|ref|ZP_00274084.1| 0       160 5 3.A.1.102.1(2) 36 0,001 3
- DrugE1(105) COG0842: ABC-type multidrug transport system, permease component [Ralstonia drugs B (gram pos.) Oleandomycin (drug resistance) exporter 7 Contig576gene3 Contig576gene2616 Contig359gene2066 Rme_1195 Contig62gene1196 gi|48768026|ref|ZP_00272378.1| 0 (M) 384 6 3.A.1.105.2(2) 45 9E-06 3
COG1131: ABC-type multidrug transport system, ATPase component [Ralstonia 2 7 Contig661gene42 Contig661gene5131 Contig375gene9090 Rme_6350 Contig72gene6351 gi|48771826|ref|ZP_00276168.1| 8E-170 (C) 316 1 3.A.1.105.2(2) 137 1E-33 2
- HemeE(107)   heme B (gram neg.)   Putative heme exporter (Note: CcmC may function independently of CcmAB) 15   Contig591gene2996 Contig375gene8794             component 1 (C) 207 0 3.A.1.107.1(3) 99 2E-22 2
COG2386: ABC-type transport system involved in cytochrome c biogenesis, permease 15 Contig591gene11 Contig591gene2997 Contig375gene8795 Rme_0163 Contig46gene163 gi|48767055|ref|ZP_00271421.1| 1,2E-51 component 2 (M) 228 6 3.A.1.107.1(3) 111 4E-26 2
COG0755: ABC-type transport system involved in cytochrome c biogenesis, permease 15 Contig591gene13 Contig591gene2999 Contig375gene8796 Rme_0164 Contig46gene164 gi|48767054|ref|ZP_00271420.1| 5E-118 component 3 (M) 245 6 3.A.1.107.1(3) 165 2E-42 2
COG4133: ABC-type transport system involved in cytochrome c biogenesis, ATPase 15 Contig624gene13 Contig624gene3819 Contig357gene1721 Rme_0597 Contig57gene598 gi|48767412|ref|ZP_00271768.1| 4E-119 component 1 (C) 211 0 3.A.1.107.1(3) 137 5E-34 2
COG2386: ABC-type transport system involved in cytochrome c biogenesis, permease 15 Contig624gene3820 Contig357gene1722 gi|48767411|ref|ZP_00271767.1| 3,5E-56 component 2 (M) 222 6 3.A.1.107.1(3) 73 1E-14 3
        6   15   Contig624gene3821 Contig357gene1723             component 3   250 4 3.A.1.107.1(3) 130 9E-32 2
- Prot1E (109) COG1132: ABC-type multidrug transport system, ATPase and permease components proteins B 1 Cyclolysin exporter 7 Contig377gene1 Contig377gene168 Contig370gene4796 Rme_4404 Contig71gene4405 gi|48771097|ref|ZP_00275440.1| 0 (M) 767 6 3.A.1.109.2(1) 271 1E-73 2
- Prot2E (110) COG3271: Predicted double-glycine peptidase [Ralstonia metallidurans CH34] proteins B (gram neg.) 1 Colicin V exporter 7 Contig703gene44 Contig703gene7941 Contig372gene5991 Rme_2347 Contig66gene2348   gi|48768312|ref|ZP_00272662.1| 2E-126       232 1 3.A.1.110.2(1) 44 6E-06 3
- Drug RA1 (120) drugs COG0488: ATPase components of ABC transporters with duplicated ATPase domains Macrolide ATPase (membrane constituent unknown) 7 Contig392gene2 Contig392gene254 Contig342gene443 Rme_2271 Contig66gene2272 gi|48768444|ref|ZP_00272794.1| 0 532 0 3.A.1.120.1(1) 192 5E-50 2
COG0488: ATPase components of ABC transporters with duplicated ATPase domains 7 Contig586gene2867 Contig355gene1406 gi|48767542|ref|ZP_00271897.1| 0 (C) 659 0 3.A.1.120.1(1) 218 7E-58 2
0
COG0488: ATPase components of ABC transporters with duplicated ATPase domains Tylosin ATPase (membrane constituent unknown) 7 Contig450gene683 Contig373gene6751 gi|48769867|ref|ZP_00274211.1| 0 379 0 3.A.1.120.2(1) 134 7E-33 2 chromosome
Oleandomycin resistance ATPase (membrane constituent unknown) 7 Contig650gene4665 .Contig353gene1211 100 0 3.A.1.120.3(1) 44 1E-06 3
0
Carbomycin resistance ATPase (membrane constituent unknown) 7 Contig502gene1338 Contig373gene6751 163 0 3.A.1.120.4(1) 51 4E-08 3 chromosome
COG0488: ATPase components of ABC transporters with duplicated ATPase domains 6 7 Contig693gene62 Contig693gene7003 Contig367gene3831 Rme_1468 Contig63gene1469 gi|48767753|ref|ZP_00272106.1| 0 (C) 670 0 3.A.1.120.4(1) 216 3E-57 2
- Drug RA2 (121) drugs COG0488: ATPase components of ABC transporters with duplicated ATPase domains   B (gram pos.)   Pristinamycin resistance protein, VgaG 7 Contig428gene1 Contig428gene488 Contig336gene249 Rme_0985 Contig61gene1073   gi|48768158|ref|ZP_00272509.1| 8E-179       350 0 3.A.1.121.2(1) 96 4E-21 2
  COG0488: ATPase components of ABC transporters with duplicated ATPase domains     2 Erythromycin ATPase (membrane constituent unknown) 7 Contig650gene2 Contig650gene4666 .Contig353gene1211 Rme_5632 Contig72gene5633   gi|48772554|ref|ZP_00276896.1| 0       146 0 3.A.1.121.1(1) 74 3E-15 3
- MacB (122) COG1136: ABC-type antimicrobial peptide transport system, ATPase component Macrolide B (gram neg.) Macrolide (14- and 15- but not 16-membered lactone macrolides including erythromycin) exporter, MacB 7 Contig405gene3 Contig405gene328 Contig353gene1239 Rme_5649 Contig72gene5650 gi|48772587|ref|ZP_00276929.1| 2E-116 (C) 234 0 3.A.1.122.1(1) 2
2 7 Contig529gene1776 Contig370gene4823 191 0 3.A.1.122.1(1) 2
- LPT (125)   lipoproteins B (gram neg.)   Lipoprotein translocation system (translocates lipoproteins from the inner membrane to periplasmic chaperone, LolA, which transfers the lipoproteins to an outer membrane receptor, LolB, which anchors the lipoprotein to the outer membrane of the Gram-negative bacterial cell envelope) (Narita et al., 2003) 10   Contig483gene1080 Contig361gene2469                 285 1 3.A.1.125.1(3)     2
COG4591: ABC-type transport system, involved in lipoprotein release, permease 10 Contig563gene11 Contig563gene2387 Contig370gene5060 Rme_4600 Contig71gene4601 gi|48770765|ref|ZP_00275108.1| 0 component 1 (M) 416 5 3.A.1.125.1(3) 2
  COG1136: ABC-type antimicrobial peptide transport system, ATPase component     3   10 Contig563gene12 Contig563gene2388 Contig370gene5061 Rme_4601 Contig71gene4602   gi|48770764|ref|ZP_00275107.1| 2E-126   component 2 (C) 249 0 3.A.1.125.1(3)     2
export -total 34 - HMT (210) COG1132: ABC-type multidrug transport system, ATPase and permease components Heavy Metals B, E The vacuolar heavy metal tolerance protein precursor, HMT1 (transports phytochelins and Cd2+phytochelin complexes) 1 Contig393gene6 Contig393gene260 Contig355gene1389 Rme_0696 Contig59gene697 gi|48767535|ref|ZP_00271890.1| 0 (M) 610 6 3.A.1.210.2(1) 249 3E-67 2
total 214 COG5265: ABC-type transport system involved in Fe-S cluster assembly, permease 2 The ABC transporter homologue 1 Contig675gene20 Contig675gene5770 Contig359gene1980 Rme_1251 Contig62gene1252 gi|48767982|ref|ZP_00272334.1| 0 (C) 630 7 3.A.1.210.3(1) 559 1E-160 2
3.A.2 H+- or Na+-translocating F-type, V-type and A-type ATPase F-ATPase   H+; Na+ B, A, E (chloro; mito)   H+-translocating F-type ATPase 1   Contig710gene8809 Contig375gene9399             component 1   289 6 3.A.2.1.1(8) 219 2E-58 2
1 Contig710gene8810 .Contig375gene9400 component 2 55 1 3.A.2.1.1(8) 49 4E-08 3
1 Contig710gene8811 Contig375gene9401 component 3 156 1 3.A.2.1.1(8) 91 4E-20 3
1 Contig710gene8812 Contig375gene9402 component 4 180 0 3.A.2.1.1(8) 105 2E-24 2
1 Contig710gene8813 Contig375gene9403 component 5 513 0 3.A.2.1.1(8) 709 0 2
1 Contig710gene8814 Contig375gene9404 component 6 291 0 3.A.2.1.1(8) 332 2E-92 2
1 Contig710gene8815 Contig375gene9405 component 7 467 1 3.A.2.1.1(8) 669 0 2
            8   1   Contig710gene8816 Contig375gene9406             component 8   138 0 3.A.2.1.1(8) 113 5E-27 2
3.A.3 P-type ATPase P-ATPase COG0474: Cation transport ATPase [Ralstonia metallidurans CH34] Na+; H+; K+; Ca2+; Mg2+; Cd2+; Cu2+; Zn2+, Cd2+, Co2+, Ni2+; Ag+; phospholipids (flipping) B, A, E Ca2+-ATPase (efflux) 1 Contig681gene46 Contig681gene6112 Contig373gene6510 Rme_3679 Contig70gene3680 gi|48770191|ref|ZP_00274535.1| 0 920 10 3.A.3.2.4(1) 615 1E-177 2
Cu2+-ATPase (uptake) 1 Contig710gene8785 Contig375gene9376 813 8 3.A.3.5.1(1) 508 1E-145 2
0
Cu+, Ag+-ATPase (efflux) (Fan and Rosen, 2002) 1 Contig709gene45 Contig709gene8627 Contig369gene4263 Rme_2418 Contig67gene2419 gi|10047068|emb|CAC07984.1| 0 805 8 3.A.3.5.5(1) 481 1E-137 2 pMol30
COG2608: Copper chaperone [Ralstonia metallidurans CH34] 1 Contig710gene8915 .Contig375gene7707 gi|48771465|ref|ZP_00275807.1| 4,6E-32 137 0 3.A.3.5.5(1) 40 0,00006 3 chromosome
0
Cu+-Ag+-ATPase (efflux), CopA 1 Contig646gene4558 .Contig375gene8429 component 1 581 6 3.A.3.5.7(1) 202 3E-53 2 pMol30
1 Contig646gene4559 .Contig375gene8429 component 2 224 4 3.A.3.5.7(1) 74 7E-15 3
COG2217: Cation transport ATPase [Ralstonia metallidurans CH34] Zn2+-, Cd2+-, Pb2+-ATPase (efflux) 1 Contig692gene3 Contig692gene6876 Contig373gene6415 Rme_0426 Contig55gene426 gi|48767132|ref|ZP_00271494.1| 0 829 6 3.A.3.6.1(1) 325 6E-90 2
0
Pb2+-ATPase (efflux) 1 Contig649gene4648 Contig374gene7074 794 6 3.A.3.6.4(1) 818 0 2 chromosome
COG2217: Cation transport ATPase [Ralstonia metallidurans CH34] 1 Contig691gene25 Contig691gene6751 Contig375gene8357 Rme_0059 Contig39gene58 gi|48766922|ref|ZP_00271296.1| 0 984 8 3.A.3.6.4(1) 905 0 2 pMol30
COG2217: Cation transport ATPase [Ralstonia metallidurans CH34] 1 Contig692gene44 Contig692gene6917 Contig373gene6441 Rme_0448 Contig55gene449 gi|48767145|ref|ZP_00271507.1| 0 799 8 3.A.3.6.4(1) 1372 0 2
COG2060: K+-transporting ATPase, A chain [Ralstonia metallidurans CH34] K+-ATPase (uptake) 1 Contig572gene17 Contig572gene2549 Contig374gene7319 Rme_4726 Contig71gene4727 gi|48770566|ref|ZP_00274909.1| 0 component 1 610 12 3.A.3.7.1(3) 581 1E-167 2 chromosome
COG2216: High-affinity K+ transport system, ATPase chain B [Ralstonia 1 Contig572gene18 Contig572gene2550 Contig374gene7320 Rme_4727 Contig71gene4728 gi|48770565|ref|ZP_00274908.1| 0 component 2 743 7 3.A.3.7.1(3) 825 0 2
COG2156: K+-transporting ATPase, c chain [Ralstonia metallidurans CH34] 13 1 Contig572gene19 Contig572gene2551 Contig374gene7321 Rme_4728 Contig71gene4729 gi|48770564|ref|ZP_00274907.1| 7,2E-98 component 3 203 1 3.A.3.7.1(3) 139 9E-35 2
3.A.5 General Secretory Pathway IISP   Proteins B, A, E   General secretory pathway complex 10   Contig564gene2401 Contig363gene2920                 463 0 3.A.5.1.1(11) 483 1E-138 2
10 Contig627gene3939 Contig363gene2773 183 0 3.A.5.1.1(11) 242 1E-65 2
10 Contig660gene5060 Contig374gene6838 361 0 3.A.5.1.1(11) 279 2E-76 2
COG0201: Preprotein translocase subunit SecY [Ralstonia metallidurans CH34] 10 Contig679gene10 Contig679gene5965 Contig367gene3758 Rme_1401 Contig63gene1402 gi|48767828|ref|ZP_00272181.1| 0 447 10 3.A.5.1.1(11) 513 5E-163 2
      COG1862: Preprotein translocase subunit YajC [Ralstonia metallidurans CH34]     5   10 Contig682gene35 Contig682gene6159 Contig372gene5749 Rme_2801 Contig68gene2802   gi|48768647|ref|ZP_00272996.1| 1,8E-44       108 1 3.A.5.1.1(11) 89 6E-20 3
3.A.6 Type III (Virulence-related) Secretory Pathway IIISP Proteins B Flagellar protein export system 10 Contig504gene1374 Contig373gene6292 150 0 3.A.6.1.2(10) 60 5E-11 3
COG3190: Flagellar biogenesis protein [Ralstonia metallidurans CH34] 10 Contig612gene1 Contig612gene3489 Contig373gene6293 Rme_3477 Contig70gene3478 gi|48770092|ref|ZP_00274436.1| 2,3E-71 component 1 162 1 3.A.6.1.2(10) 75 2E-15 3
COG1338: Flagellar biosynthesis pathway, component FliP [Ralstonia metallidurans 10 Contig612gene2 Contig612gene3490 Contig373gene6294 Rme_3478 Contig70gene3479 gi|48770093|ref|ZP_00274437.1| 3E-129 component 2 264 4 3.A.6.1.2(10) 347 3E-97 2
COG1987: Flagellar biosynthesis pathway, component FliQ [Ralstonia metallidurans 10 Contig612gene3 Contig612gene3491 Contig373gene6295 Rme_3479 Contig70gene3480 gi|48770094|ref|ZP_00274438.1| 2,4E-27 component 3 89 2 3.A.6.1.2(10) 76 2E-16 3
COG1684: Flagellar biosynthesis pathway, component FliR [Ralstonia metallidurans 10 Contig612gene4 Contig612gene3492 Contig373gene6296 Rme_3480 Contig70gene3481 gi|48770095|ref|ZP_00274439.1| 3E-124 component 4 261 6 3.A.6.1.2(10) 209 1E-55 2
COG1766: Flagellar biosynthesis/type III secretory pathway lipoprotein [Ralstonia 10 Contig698gene42 Contig698gene7422 Contig373gene6256 Rme_3445 Contig70gene3446 gi|48770052|ref|ZP_00274396.1| 0 component 1 563 2 3.A.6.1.2(10) 459 1E-130 2
COG1317: Flagellar biosynthesis/type III secretory pathway protein [Ralstonia 10 Contig698gene44 Contig698gene7424 Contig373gene6258 Rme_3447 Contig70gene3448 gi|48770054|ref|ZP_00274398.1| 2E-125 component 2 278 0 3.A.6.1.2(10) 97 8E-22 2
COG1157: Flagellar biosynthesis/type III secretory pathway ATPase [Ralstonia 10 Contig698gene45 Contig698gene7425 Contig373gene6259 Rme_3448 Contig70gene3449 gi|48770055|ref|ZP_00274399.1| 0 component 3 522 0 3.A.6.1.2(10) 594 1E-171 2
COG1377: Flagellar biosynthesis pathway, component FlhB [Ralstonia metallidurans 10 Contig706gene5 Contig706gene8218 Contig371gene5351 Rme_3027 Contig69gene3028 gi|48769277|ref|ZP_00273623.1| 0 component 1 380 4 3.A.6.1.2(10) 327 9E-91 2
COG1298: Flagellar biosynthesis pathway, component FlhA [Ralstonia metallidurans 10 10 Contig706gene6 Contig706gene8219 Contig371gene5352 Rme_3028 Contig69gene3029 gi|48769278|ref|ZP_00273624.1| 0 component 2 695 8 3.A.6.1.2(10) 822 0 2
3.A.7 Type IV (Conjugal DNA-Protein Transfer or VirB) Secretory Pathway IVSP COG2948: Type IV secretory pathway, VirB10 components [Ralstonia metallidurans Proteins, protein-DNA complexes B   Trb proteins of Enterobacter aerogenes plasmid IncP 10 Contig373gene2 Contig373gene153 .Contig351gene1012 Rme_1062 Contig61gene940   gi|48768104|ref|ZP_00272455.1| 2E-139       373 2 3.A.7.4.1(10) 149 2E-37 2
COG3505: Type IV secretory pathway, VirD4 components [Ralstonia metallidurans 10 Contig573gene4 Contig573gene2559 Contig342gene418 Rme_1051 Contig35gene38 gi|48766906|ref|ZP_00271282.1| 0 component 1 669 2 3.A.7.X 171 1E-43 2
10 Contig573gene2561 Contig342gene420 component 2 358 0 3.A.7.4.1(10) 233 1E-62 2
COG3451: Type IV secretory pathway, VirB4 components [Ralstonia metallidurans 10 Contig573gene9 Contig573gene2564 Contig351gene1006 Rme_1056 Contig61gene934 gi|48768098|ref|ZP_00272449.1| 0 component 3 819 0 3.A.7.4.1(10) 496 1E-141 2
COG5314: Conjugal transfer/entry exclusion protein [Ralstonia metallidurans CH34] 10 Contig573gene10 Contig573gene2565 Contig351gene1007 Rme_1057 Contig61gene935 gi|48768099|ref|ZP_00272450.1| 2,6E-96 component 4 245 1 3.A.7.4.1(10) 44 0,00001 3
COG3846: Type IV secretory pathway, TrbL components [Ralstonia metallidurans 10 Contig573gene12 Contig573gene2567 Contig351gene1009 Rme_1059 Contig61gene937 gi|48768101|ref|ZP_00272452.1| 2E-160 component 5 459 7 3.A.7.X 39 0,0008 3
COG3701: Type IV secretory pathway, TrbF components [Ralstonia metallidurans 10 Contig573gene13 Contig573gene2568 Contig351gene1010 Rme_2258 Contig61gene938 gi|48768102|ref|ZP_00272453.1| 2E-130 component 6 234 1 3.A.7.4.1(10) 102 3E-23 2
COG3504: Type IV secretory pathway, VirB9 components [Ralstonia metallidurans 10 Contig573gene14 Contig573gene2569 Contig351gene1011 Rme_1061 Contig61gene939 gi|48768103|ref|ZP_00272454.1| 3E-138 component 7 330 0 3.A.7.4.1(10) 115 3E-27 2
COG3451: Type IV secretory pathway, VirB4 components [Ralstonia metallidurans 10 Contig600gene14 Contig600gene3206 Contig342gene423 Rme_2254 Contig66gene2255 gi|48768465|ref|ZP_00272815.1| 0 component 1 809 0 3.A.7.4.1(10) 497 1E-142 2
COG5314: Conjugal transfer/entry exclusion protein [Ralstonia metallidurans CH34] 10 Contig600gene15 Contig600gene3207 Contig342gene424 Rme_2255 Contig66gene2256 gi|48768464|ref|ZP_00272814.1| 1E-101 component 1 241 1 3.A.7.4.1(10) 52 2E-08 3
10 Contig600gene3212 .Contig342gene427 component 2 171 1 3.A.7.4.1(10) 72 2E-14 3
10 Contig600gene3213 Contig342gene428 component 3 288 0 3.A.7.4.1(10) 95 5E-21 2
COG2948: Type IV secretory pathway, VirB10 components [Ralstonia metallidurans 10 Contig600gene23 Contig600gene3215 Contig342gene429 Rme_2260 Contig66gene2261 gi|48768459|ref|ZP_00272809.1| 0 component 4 502 1 3.A.7.4.1(10) 155 5E-39 2
10 Contig712gene9279 Contig368gene4065 component 1 818 2 3.A.7.4.1(10) 145 1E-35 2 pMol28
10 Contig712gene9280 Contig368gene4066 component 2 252 1 3.A.7.4.1(10) 3
10 Contig712gene9329 Contig368gene4116 component 1 303 0 3.A.7.4.1(10) 76 3E-15 3
10 Contig712gene9330 Contig368gene4117 component 2 414 2 3.A.7.4.1(10) 131 6E-32 2
0
COG4962: Flp pilus assembly protein, ATPase CpaF [Ralstonia metallidurans CH34] LvhB proteins of Legionella pneumophila 10 Contig689gene32 Contig689gene6591 Contig371gene5307 Rme_2987 Contig69gene2988 gi|48769236|ref|ZP_00273582.1| 0 438 0 3.A.7.5.1(10) 165 5E-42 2 chromosome
COG4962: Flp pilus assembly protein, ATPase CpaF [Ralstonia metallidurans CH34] 10 Contig701gene31 Contig701gene7684 Contig365gene3342 Rme_4269 Contig71gene4270 gi|48771160|ref|ZP_00275503.1| 0 456 0 3.A.7.5.1(10) 146 3E-36 2
            20   10   Contig712gene9276 Contig368gene4062                 379 0 3.A.7.5.1(10) 144 1E-35 2 pMol28
3.A.11 Bacterial Competence-related DNA Transformation Transporter DNA-T COG0658: Predicted membrane metal-binding protein [Ralstonia metallidurans CH34] Single-stranded DNA B 1 DNA translocase 12 Contig563gene2390 Contig370gene5063 gi|48770762|ref|ZP_00275105.1| 0 851 9 3.A.11.1.1(3) 113 4E-26 2 chromosome
3.A.12 Septal DNA Translocator S-DNA-T COG1674: DNA segregation ATPase FtsK/SpoIIIE and related proteins [Ralstonia DNA, DNA-protein-complexes B   Cell division protein, FtsK 12 Contig590gene1 Contig590gene2962 Contig357gene1647 Rme_5541 Contig72gene5542   gi|48772408|ref|ZP_00276750.1| 0       584 0 3.A.12.1.2(1) 590 1E-169 2
      COG1674: DNA segregation ATPase FtsK/SpoIIIE and related proteins [Ralstonia     2   12   Contig578gene2660 Contig346gene649       gi|48771116|ref|ZP_00275459.1| 0       775 4 3.A.12.1.2(1) 566 1E-162 2
3.A.13 Filamentous Phage Exporter FPhE hypothetical protein Reut02003785 [Ralstonia metallidurans CH34] Viruses Gram-negative bacteria 1 The f1 assembly/export channel 12 Contig623gene14 Contig623gene3784 Contig374gene7161 Rme_2613 Contig67gene2614 gi|48769093|ref|ZP_00273440.1| 0 358 0 3.A.13.1.1(1) 169 3E-43 2
3.A.15 Outer Membrane Protein Secreting Main Terminal Branch MTB COG2804: Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, pilin/fimbrilin Gram-negative bacteria   The pilin secretion/fimbrial assembly system 10   Contig501gene1317 Contig363gene2929       gi|48767601|ref|ZP_00271955.1| 0   component 1   436 1 3.A.15.2.1(10) 62 1E-11 3
COG1459: Type II secretory pathway, component PulF [Ralstonia metallidurans CH34] 10 Contig501gene2 Contig501gene1318 Contig363gene2930 Rme_0905 Contig60gene906 gi|48767600|ref|ZP_00271954.1| 0 component 2 421 4 3.A.15.2.1(10) 461 1E-131 2
COG1989: Type II secretory pathway, prepilin signal peptidase PulO and related 10 Contig501gene3 Contig501gene1319 Contig363gene2931 Rme_0906 Contig60gene907 gi|48767599|ref|ZP_00271953.1| 2E-130 component 3 289 7 3.A.15.2.1(10) 341 4E-95 2
COG4969: Tfp pilus assembly protein, major pilin PilA [Ralstonia metallidurans 10 Contig578gene16 Contig578gene2675 Contig346gene667 Rme_4233 Contig71gene4234 gi|48771105|ref|ZP_00275448.1| 6E-50 154 1 3.A.15.2.1(10) 73 4E-14 3
COG2805: Tfp pilus assembly protein, pilus retraction ATPase PilT [Ralstonia 10 Contig639gene25 Contig639gene4335 Contig372gene5842 Rme_2863 Contig68gene2864 gi|48768636|ref|ZP_00272985.1| 0 component 1 347 0 3.A.15.2.1(10) 266 1E-72 2
COG5008: Tfp pilus assembly protein, ATPase PilU [Ralstonia metallidurans CH34] 10 Contig639gene26 Contig639gene4336 Contig372gene5843 Rme_2864 Contig68gene2865 gi|48768635|ref|ZP_00272984.1| 0 component 2 381 0 3.A.15.2.1(10) 2
COG2165: Type II secretory pathway, pseudopilin PulG [Ralstonia metallidurans 10 Contig642gene16 Contig642gene4433 Contig375gene9231 Rme_6442 Contig72gene6443 gi|48771631|ref|ZP_00275973.1| 3,6E-98 component 1 202 1 3.A.15.X 106 8E-25 2
COG1459: Type II secretory pathway, component PulF [Ralstonia metallidurans CH34] 10 Contig642gene17 Contig642gene4434 Contig375gene9232 Rme_6443 Contig72gene6444 gi|48771630|ref|ZP_00275972.1| 2E-172 component 2 442 3 3.A.15.X 445 1E-126 2
COG2804: Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, 10 Contig642gene18 Contig642gene4435 Contig375gene9233 Rme_6444 Contig72gene6445 gi|48771629|ref|ZP_00275971.1| 0 component 3 568 0 3.A.15.X 303 1E-83 2
COG4969: Tfp pilus assembly protein, major pilin PilA [Ralstonia metallidurans 10 Contig677gene18 Contig677gene5875 Contig352gene1091 Rme_1293 Contig62gene1294 gi|48767901|ref|ZP_00272253.1| 4E-79 component 1 182 1 3.A.15.2.1(10) 48 3E-07 3
10 Contig677gene5876 Contig352gene1092 component 2 234 1 3.A.15.2.1(10) 61 5E-11 3
COG4968: Tfp pilus assembly protein PilE [Ralstonia metallidurans CH34] 10 Contig705gene76 Contig705gene8161 Contig374gene7449 Rme_4834 Contig71gene4835 gi|48770411|ref|ZP_00274754.1| 2,7E-56 147 2 3.A.15.2.1(10) 62 1E-11 3
COG4968: Tfp pilus assembly protein PilE [Ralstonia metallidurans CH34] 10 Contig711gene9136 Contig375gene8624 gi|48770578|ref|ZP_00274921.1| 1,5E-81 167 2 3.A.15.2.1(10) 49 2E-07 3
10 Contig712gene9338 Contig368gene4125 635 0 3.A.15.2.1(10) 79 1E-16 3 pMol28
0
COG4795: Type II secretory pathway, component PulJ [Ralstonia metallidurans CH34] The pullulanase secretion system 10 Contig708gene33 Contig708gene8490 Contig375gene7605 Rme_4955 Contig72gene4956 gi|48771328|ref|ZP_00275670.1| 8E-117 component 1 284 1 3.A.15.1.1(14) 39 0,0003 3 chromosome
COG3156: Type II secretory pathway, component PulK [Ralstonia metallidurans CH34] 10 Contig708gene34 Contig708gene8491 Contig375gene7606 Rme_4956 Contig72gene4957 gi|48771329|ref|ZP_00275671.1| 2E-173 component 2 327 1 3.A.15.1.1(14) 49 5E-07 3
COG2804: Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, 10 Contig708gene39 Contig708gene8496 Contig375gene7611 Rme_4961 Contig72gene4962 gi|48771334|ref|ZP_00275676.1| 0 component 1 513 0 3.A.15.1.1(14) 498 1E-142 2
COG1459: Type II secretory pathway, component PulF [Ralstonia metallidurans CH34] 18 10 Contig708gene40 Contig708gene8497 Contig375gene7612 Rme_4962 Contig72gene4963 gi|48771335|ref|ZP_00275677.1| 2E-176 component 2 405 4 3.A.15.1.1(14) 232 3E-62 2
                                0                    
3.B. Decarboxylation-driven Active Transporters 0
3.B.1 Na+-transporting Carboxylic Acid Decarboxylase NaT-DC COG4799: Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha Na+ B, A   Na+-transporting methylmalonyl-CoA decarboxylase 1 Contig561gene18 Contig561gene2349 Contig358gene1826 Rme_5614 Contig72gene5615   gi|48772521|ref|ZP_00276863.1| 0       539 4 3.B.1.1.2(5) 202 5E-53 2 chromosome
2 1 Contig701gene7710 Contig365gene3364 323 1 3.B.1.1.2(5) 160 1E-40 2
                                0                    
3.D. Oxidoreduction-driven Active Transporters 0
3.D.1 Proton-translocating NADH Dehydrogenase NDH COG1252: NADH dehydrogenase, FAD-containing subunit [Ralstonia metallidurans H+ or NA+(efflux) B, E (mito, chloro) 1 NADH dehydrogenase I 1 Contig522gene3 Contig522gene1647 Contig356gene1471 Rme_1617 Contig64gene1618   gi|48768887|ref|ZP_00273235.1| 0       467 3 3.D.1.1.1(14) 360 1E-100 2 chromosome
2 0
COG0838: NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Ralstonia NADH dehydrogenase I 1 Contig626gene1 Contig626gene3870 Contig370gene4970 Rme_4527 Contig71gene4528 gi|48770878|ref|ZP_00275221.1| 7,2E-67 component 1 119 3 3.D.1.2.1(14) 131 9E-33 2 chromosome
COG0377: NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S 1 Contig626gene2 Contig626gene3871 Contig370gene4971 Rme_4528 Contig71gene4529 gi|48770877|ref|ZP_00275220.1| 8,3E-83 component 2 160 1 3.D.1.2.1(14) 200 3E-53 2
COG0852: NADH:ubiquinone oxidoreductase 27 kD subunit [Ralstonia metallidurans 1 Contig626gene3 Contig626gene3872 Contig370gene4972 Rme_4529 Contig71gene4530 gi|48770876|ref|ZP_00275219.1| 1E-115 component 3 199 0 3.D.1.2.1(14) 145 2E-36 2
COG0649: NADH:ubiquinone oxidoreductase 49 kD subunit 7 [Ralstonia metallidurans 1 Contig626gene4 Contig626gene3873 Contig370gene4973 Rme_4530 Contig71gene4531 gi|48770875|ref|ZP_00275218.1| 0 component 4 417 0 3.D.1.2.1(14) 492 1E-140 2
COG1905: NADH:ubiquinone oxidoreductase 24 kD subunit [Ralstonia metallidurans 1 Contig626gene5 Contig626gene3874 Contig370gene4974 Rme_4531 Contig71gene4532 gi|48770874|ref|ZP_00275217.1| 3,5E-95 component 5 168 1 3.D.1.2.1(14) 86 1E-18 3
COG1894: NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Ralstonia 1 Contig626gene6 Contig626gene3875 Contig370gene4975 Rme_4532 Contig71gene4533 gi|48770873|ref|ZP_00275216.1| 0 component 6 431 1 3.D.1.2.1(14) 403 1E-114 2
COG1034: NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain 1 Contig626gene7 Contig626gene3876 Contig370gene4976 Rme_4533 Contig71gene4534 gi|48770872|ref|ZP_00275215.1| 0 component 7 828 1 3.D.1.2.1(14) 360 1E-100 2
COG1005: NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Ralstonia 1 Contig626gene8 Contig626gene3877 Contig370gene4977 Rme_4534 Contig71gene4535 gi|48770871|ref|ZP_00275214.1| 0 component 8 354 8 3.D.1.2.1(14) 276 1E-75 2
COG1143: Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD 1 Contig626gene10 Contig626gene3879 Contig370gene4979 Rme_4535 Contig71gene4536 gi|48770870|ref|ZP_00275213.1| 8,1E-89 component 9 163 0 3.D.1.2.1(14) 191 1E-50 2
COG0839: NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Ralstonia 1 Contig626gene11 Contig626gene3880 Contig370gene4980 Rme_4536 Contig71gene4537 gi|48770869|ref|ZP_00275212.1| 1,5E-62 component 10 225 5 3.D.1.2.1(14) 65 4E-12 3
COG0713: NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Ralstonia 1 Contig626gene12 Contig626gene3881 Contig370gene4981 Rme_4537 Contig71gene4538 gi|48770868|ref|ZP_00275211.1| 5,6E-40 component 11 101 3 3.D.1.2.1(14) 112 4E-27 2
1 Contig626gene3882 Contig370gene4982 component 12 278 7 3.D.1.2.1(14) 190 7E-50 2
COG1009: NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ 1 Contig626gene14 Contig626gene3883 Contig370gene4982 Rme_4538 Contig71gene4539 gi|48770867|ref|ZP_00275210.1| 0 component 13 392 8 3.D.1.2.1(14) 231 4E-62 2
COG1007: NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Ralstonia 1 Contig626gene16 Contig626gene3885 Contig370gene4984 Rme_4540 Contig71gene4541 gi|48770865|ref|ZP_00275208.1| 0 component 14 491 14 3.D.1.2.1(14) 260 1E-70 2
COG1894: NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Ralstonia 1 Contig674gene1 Contig674gene5715 Contig365gene3228 Rme_4330 Contig71gene4331 gi|48771244|ref|ZP_00275587.1| 1E-108 component 1 211 1 3.D.1.X 101 4E-23 2
COG3383: Uncharacterized anaerobic dehydrogenase [Ralstonia metallidurans CH34] 1 Contig674gene2 Contig674gene5716 Contig365gene3229 Rme_4331 Contig71gene4332 gi|48771243|ref|ZP_00275586.1| 0 component 2 957 0 3.D.1.X 154 2E-38 2
0
COG1894: NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Ralstonia 1 Contig694gene45 Contig694gene7069 Contig369gene4352 Rme_6064 Contig72gene6065 gi|48772240|ref|ZP_00276582.1| 0 component 1 414 2 3.D.1.1.1(14) 249 2E-67 2 chromosome
COG1252: NADH dehydrogenase, FAD-containing subunit [Ralstonia metallidurans 1 Contig694gene66 Contig694gene7090 Contig364gene3085 Rme_4638 Contig71gene4639 gi|48770710|ref|ZP_00275053.1| 0 component 2 402 1 3.D.1.1.1(14) 61 1E-10 3
      COG1008: NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Ralstonia     20 NADH dehydrogenase I 1 Contig626gene15 Contig626gene3884 Contig370gene4983 Rme_4539 Contig71gene4540   gi|48770866|ref|ZP_00275209.1| 0       488 14 3.D.1.3.1(14) 446 1E-126 2
3.D.2 Proton-translocating Transhydrogenase PTH COG3288: NAD/NADP transhydrogenase alpha subunit [Ralstonia metallidurans CH34] H+ (efflux) B, E (mito) H+-translocating transhydrogenase 1 Contig455gene7 Contig455gene743 Contig334gene207 Rme_6656 Contig72gene6657 gi|48771283|ref|ZP_00275625.1| 3,5E-43 component 1 98 2 3.D.2.2.1(3) 57 1E-10 3
COG1282: NAD/NADP transhydrogenase beta subunit [Ralstonia metallidurans CH34] 1 Contig455gene8 Contig455gene744 Contig334gene208 Rme_6657 Contig72gene6658 gi|48771282|ref|ZP_00275624.1| 0 component 2 457 10 3.D.2.2.1(3) 375 1E-105 2
COG3288: NAD/NADP transhydrogenase alpha subunit [Ralstonia metallidurans CH34] 1 Contig581gene19 Contig581gene2736 Contig326gene94 Rme_0207 Contig47gene207 gi|48767080|ref|ZP_00271444.1| 5E-137 257 1 3.D.2.2.1(3) 194 6E-51 2
COG3288: NAD/NADP transhydrogenase alpha subunit [Ralstonia metallidurans CH34] 1 Contig682gene50 Contig682gene6174 Contig372gene5764 Rme_2807 Contig68gene2808 gi|48768665|ref|ZP_00273014.1| 0 component 1 401 0 3.D.2.2.1(3) 332 2E-92 2
COG3288: NAD/NADP transhydrogenase alpha subunit [Ralstonia metallidurans CH34] 1 Contig682gene51 Contig682gene6175 Contig372gene5765 Rme_2808 Contig68gene2809 gi|48768666|ref|ZP_00273015.1| 2,7E-47 component 2 152 3 3.D.2.2.1(3) 107 2E-25 2
COG1282: NAD/NADP transhydrogenase beta subunit [Ralstonia metallidurans CH34] 6 1 Contig682gene52 Contig682gene6176 Contig372gene5766 Rme_2809 Contig68gene2810 gi|48768667|ref|ZP_00273016.1| 0 component 3 490 10 3.D.2.2.1(3) 494 1E-141 2
3.D.3 Proton-translocating Quinol:Cytochrome c Reductase QCR COG0723: Rieske Fe-S protein [Ralstonia metallidurans CH34] H+ (efflux) B, E (mito; chloro)   Ubiquinol:cytochrome c oxidoreductase 1 Contig693gene53 Contig693gene6994 Contig367gene3822 Rme_1460 Contig63gene1461   gi|48767762|ref|ZP_00272115.1| 5,1E-99   component 1   205 1 3.D.3.1.1(3) 103 5E-24 2
COG1290: Cytochrome b subunit of the bc complex [Ralstonia metallidurans CH34] 1 Contig693gene54 Contig693gene6995 Contig367gene3823 Rme_1461 Contig63gene1462 gi|48767761|ref|ZP_00272114.1| 0 component 2 467 13 3.D.3.1.1(3) 320 8E-89 2
      COG2857: Cytochrome c1 [Ralstonia metallidurans CH34]     3   1 Contig693gene55 Contig693gene6996 Contig367gene3824 Rme_1462 Contig63gene1463   gi|48767760|ref|ZP_00272113.1| 2E-136   component 3   247 2 3.D.3.X 77 9E-16 3
3.D.4 Proton-translocating Cytochrome Oxidase COX COG3278: Cbb3-type cytochrome oxidase, subunit 1 [Ralstonia metallidurans CH34] H+ (efflux) B, A, E (mito) Cytochrome c oxidase 1 Contig646gene12 Contig646gene4553 Contig375gene8425 Rme_0087 Contig42gene100 gi|48766969|ref|ZP_00271339.1| 0 518 13 3.D.4.2.1(1) 76 4E-15 3 pMol30
0
COG3278: Cbb3-type cytochrome oxidase, subunit 1 [Ralstonia metallidurans CH34] Cytochrome oxidase 1 Contig493gene1 Contig493gene1198 Contig360gene2255 Rme_2111 Contig65gene2112 gi|48769520|ref|ZP_00273865.1| 0 479 12 3.D.4.3.1(1) 74 1E-14 3 chromosome
COG3278: Cbb3-type cytochrome oxidase, subunit 1 [Ralstonia metallidurans CH34] 1 Contig694gene73 Contig694gene7097 Contig364gene3091 Rme_4642 Contig71gene4643 gi|48770699|ref|ZP_00275042.1| 0 529 13 3.D.4.3.1(1) 62 6E-11 3
0
COG1622: Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Ralstonia Quinol oxidase 1 Contig626gene24 Contig626gene3893 Contig370gene4992 Rme_4548 Contig71gene4549 gi|48770857|ref|ZP_00275200.1| 7E-153 component 1 322 3 3.D.4.5.1(5) 273 7E-75 2 chromosome
COG0843: Heme/copper-type cytochrome/quinol oxidases, subunit 1 [Ralstonia 1 Contig626gene25 Contig626gene3894 Contig370gene4993 Rme_4549 Contig71gene4550 gi|48770856|ref|ZP_00275199.1| 0 component 2 657 14 3.D.4.5.1(5) 962 0 2
COG1845: Heme/copper-type cytochrome/quinol oxidase, subunit 3 [Ralstonia 1 Contig626gene26 Contig626gene3895 Contig370gene4994 Rme_4550 Contig71gene4551 gi|48770855|ref|ZP_00275198.1| 5E-103 component 3 214 5 3.D.4.5.1(5) 232 1E-62 2
COG3125: Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Ralstonia 1 Contig626gene27 Contig626gene3896 Contig370gene4995 Rme_4551 Contig71gene4552 gi|48770854|ref|ZP_00275197.1| 1,5E-45 component 4 116 3 3.D.4.5.1(5) 86 7E-19 3
COG0109: Polyprenyltransferase (cytochrome oxidase assembly factor) [Ralstonia 1 Contig660gene24 Contig660gene5083 Contig374gene7516 Rme_4890 Contig71gene4891 gi|48770334|ref|ZP_00274677.1| 2E-142 308 9 3.D.4.5.1(5) 112 2E-26 2
0
COG0843: Heme/copper-type cytochrome/quinol oxidases, subunit 1 [Ralstonia Cytochrome oxidase 1 Contig660gene15 Contig660gene5074 Contig374gene7508 Rme_4883 Contig71gene4884 gi|48770343|ref|ZP_00274686.1| 0 component 1 536 12 3.D.4.6.1(2) 510 5E-163 2 chromosome
COG1845: Heme/copper-type cytochrome/quinol oxidase, subunit 3 [Ralstonia 1 Contig660gene19 Contig660gene5078 Contig374gene7512 Rme_4887 Contig71gene4888 gi|48770339|ref|ZP_00274682.1| 5E-158 component 2 286 7 3.D.4.X 167 6E-43 2
COG1622: Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Ralstonia 1 Contig667gene35 Contig667gene5409 Contig375gene8971 Rme_6265 Contig72gene6266 gi|48771967|ref|ZP_00276309.1| 0 component 1 391 3 3.D.4.X 62 6E-11 3
COG0843: Heme/copper-type cytochrome/quinol oxidases, subunit 1 [Ralstonia 1 Contig667gene36 Contig667gene5410 Contig375gene8972 Rme_6266 Contig72gene6267 gi|48771966|ref|ZP_00276308.1| 0 component 2 585 12 3.D.4.X 410 1E-115 2
COG1845: Heme/copper-type cytochrome/quinol oxidase, subunit 3 [Ralstonia 1 Contig667gene37 Contig667gene5411 Contig375gene8973 Rme_6267 Contig72gene6268 gi|48771965|ref|ZP_00276307.1| 5E-119 component 3 222 5 3.D.4.X 44 0,00001 3
COG1845: Heme/copper-type cytochrome/quinol oxidase, subunit 3 [Ralstonia 1 Contig667gene38 Contig667gene5412 Contig375gene8974 Rme_6268 Contig72gene6269 gi|48771964|ref|ZP_00276306.1| 9E-133 component 4 234 5 3.D.4.X 76 1E-15 3
COG1622: Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Ralstonia 1 Contig707gene35 Contig707gene8365 Contig372gene5641 Rme_2216 Contig66gene2217 gi|48768389|ref|ZP_00272739.1| 6E-144 component 1 319 3 3.D.4.5.1(5) 272 2E-74 2
COG0843: Heme/copper-type cytochrome/quinol oxidases, subunit 1 [Ralstonia 1 Contig707gene36 Contig707gene8366 Contig372gene5642 Rme_2217 Contig66gene2218 gi|48768390|ref|ZP_00272740.1| 0 component 2 658 15 3.D.4.5.1(5) 947 0 2
COG1845: Heme/copper-type cytochrome/quinol oxidase, subunit 3 [Ralstonia 1 Contig707gene37 Contig707gene8367 Contig372gene5643 Rme_2218 Contig66gene2219 gi|48768391|ref|ZP_00272741.1| 4E-112 component 3 226 5 3.D.4.5.1(5) 228 2E-61 2
COG3125: Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Ralstonia 1 Contig707gene38 Contig707gene8368 Contig372gene5644 Rme_2219 Contig66gene2220 gi|48768392|ref|ZP_00272742.1| 2,1E-58 component 4 121 3 3.D.4.5.1(5) 74 2E-15 3
1 Contig711gene9078 Contig375gene8913 component 1 349 4 3.D.4.5.1(5) 254 5E-69 2
1 Contig711gene9079 Contig375gene8914 component 2 667 15 3.D.4.5.1(5) 832 0 2
1 Contig711gene9080 Contig375gene8915 component 3 218 5 3.D.4.5.1(5) 236 8E-64 2
1 Contig711gene9081 .Contig375gene8916 component 4 93 2 3.D.4.5.1(5) 71 8E-15 3
COG3125: Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Ralstonia 1 Contig711gene9082 .Contig375gene8916 1 gi|48772112|ref|ZP_00276454.1| 2,8E-23 component 5 48 1 3.D.4.5.1(5) 35 0,0009 3
0
24 Cytochrome oxidase 1 Contig524gene1685 Contig374gene7507 179 3 3.D.4.7.1(3) 61 4E-11 3 chromosome
0
4. Phosphotransferase Systems                             0                  
4.A.6 PTS Mannose-Fructose-Sorbose Man COG1752: Predicted esterase of the alpha-beta hydrolase superfamily [Ralstonia Glucose, mannose, fructose, sorbose, etc. B Mannose 4 Contig496gene1 Contig496gene1237 Contig362gene2525 Rme_1840 Contig65gene1841 gi|48769618|ref|ZP_00273963.1| 2E-119 254 1 4.A.6.1.1(3) 3 chromosome
COG2893: Phosphotransferase system, mannose/fructose-specific component IIA 2 Fructose porter 4 Contig705gene123 Contig705gene8208 Contig374gene7493 Rme_4871 Contig71gene4872 gi|48770360|ref|ZP_00274703.1| 7,8E-72 151 0 4.A.6.1.2(4) 55 2E-09 3
0
5.A. Transmembrane Electron Transfer Carriers                             0                  
5.A.1 Disulfide Bond Oxidoreductase D DsbD COG0526: Thiol-disulfide isomerase and thioredoxins [Ralstonia metallidurans 2 e- B, A Disulfide bond oxidoreductase-D, 16 Contig591gene21 Contig591gene3007 Contig375gene8804 Rme_0171 Contig46gene171 gi|48767047|ref|ZP_00271413.1| 1E-125 278 4 5.A.1.1.1(1) 41 0,00007 3 chromosome
COG4232: Thiol:disulfide interchange protein [Ralstonia metallidurans CH34] 2 16 Contig679gene19 Contig679gene5974 Contig367gene3767 Rme_1409 Contig63gene1410 gi|48767820|ref|ZP_00272173.1| 0 645 9 5.A.1.1.1(1) 273 3E-74 2
5.A.2 Disulfide Bond Oxidoreductase B DsbB COG1495: Disulfide bond formation protein DsbB [Ralstonia metallidurans CH34] 2 e- Gram-negative bacteria   Disulfide bond formation protein 16 Contig428gene10 Contig428gene497 Contig336gene256 Rme_1103 Contig61gene981   gi|48768157|ref|ZP_00272508.1| 2,8E-73       255 4 5.A.2.1.1(1) 62 2E-11 3
5.A.3 Prokaryotic Molybdopterin-containing Oxidoreductase PMO COG0243: Anaerobic dehydrogenases, typically selenocysteine-containing [Ralstonia proton translocation B Anaerobic, respiratory, membrane-bound formate dehydrogenase, FdnGHI 1 Contig453gene1 Contig453gene705 Contig340gene359 Rme_0248 Contig50gene248 gi|48767069|ref|ZP_00271434.1| 0 701 0 5.A.3.2.1(3) 78 2E-15 3
1 Contig521gene1641 Contig366gene3609 component 1 1025 1 5.A.3.2.1(3) 248 1E-66 2
COG0437: Fe-S-cluster-containing hydrogenase components 1 [Ralstonia 1 Contig521gene13 Contig521gene1642 Contig366gene3610 Rme_1546 Contig64gene1547 gi|48768766|ref|ZP_00273114.1| 1E-123 component 2 226 0 5.A.3.2.1(3) 72 3E-14 3
1 Contig521gene1644 Contig366gene3612 component 3 418 6 5.A.3.2.1(3) 95 7E-21 2
0
COG5013: Nitrate reductase alpha subunit [Ralstonia metallidurans CH34] Anaerobic, respiratory, membrane-bound nitrate reductase, NarGHI 1 Contig651gene13 Contig651gene4730 Contig360gene2128 Rme_1815 Contig65gene1816 gi|48769551|ref|ZP_00273896.1| 0 component 1 1252 0 5.A.3.1.1(3) 1790 0 2 chromosome
COG1140: Nitrate reductase beta subunit [Ralstonia metallidurans CH34] <